【目的】克隆猴头菌CB1锰过氧化物酶(Mn P)基因,用于分析He-mnp1基因及蛋白序列、基因的结构与功能,为研究猴头菌Mn Ps基因功能、转录调控和构建优良工程菌株提供参考。【方法】根据Gen Bank中已报道的白腐菌Mn Ps基因c DNA序列的保守区域设计引物,采用简并PCR、逆转录RT-PCR、c DNA末端的快速扩增(RACE)等方法扩增出全长c DNA基因序列,命名为He-mnp1(Gen Bank登录号为HM116841.3),并对其猴头菌He-mnp1基因进行生物信息学的分析。通过NCBI数据库进行BLAST同源搜索;ORF Finder查找该基因的完整开放阅读框(ORF);利用Expasy数据库和Bio Edit软件预测He-mnp1蛋白质的理化特性及氨基酸的组成;同时进行亲/疏水性及跨膜区的分析;采用Signal P 4.1软件进行蛋白信号肽的预测;并利用Clustal W和MEGA 5.1软件对He-mnp1蛋白序列同源性比对和构建白腐菌Mn Ps系统发育树;利用数据库Conserved Domain Database(CDD)蛋白保守结构域的预测,查看He-mnp1血红素、基质及锰、钙等结合位点;采用Predict Protein软件和SWISS-MODEL软件进行He-mnp1蛋白二级结构的预测和同源三维建模。【结果】该基因He-mnp1的c DNA全长1 279 bp,完整开放阅读框1 080 bp,起始密码子ATG,终止密码子TAA,5'端非翻译区有68个核苷酸,3'端非翻译区有131个核苷酸,编码蛋白359 aa;生物信息学分析表明,猴头菌He-mnp1氨基酸组成中丙氨酸含量最高,无酪氨酸,分子量为38.18 k Da,等电点为4.35,He-mnp1的蛋白有明显的亲水区,存在81-105、121-141间有2处疏水区域,此蛋白为亲水蛋白。He-mnp1蛋白质多肽前体包含1个18 aa的信号肽及1个5 aa的中间前导短肽。【结论】蛋白系统进化分析表明He-mnp1分布在第2组群,与平菇侧耳、冬生多孔菌、变色栓菌的Mn Ps亲缘关系最为接近。He-mnp1基因存在1个保守结构域,分析显示为ClassⅡ类的真菌血红素过氧化物酶蛋白家族。He-mnp1蛋白?
[Objective]The cDNA gene sequences of Manganese peroxidase ( MnP) were isolated from H. erinaceum CB1,and used for analyzing structure and function of the He-mnp1.[Method]Degenerate primers were designed according to conservative domain of white-rot fungi MnPs gene cDNA sequences reported in GenBank,the full-length cDNA gene sequence was obtained by using the methods of PCR,Reverse transcription-PCR and Rapid Amplification of cDNA Ends (RACE) and named as He-mnp1(GenBank No. HM116841. 3),and the bioinformatics of He-mnp1 gene were analyzed. BLAST homology search was conducted through the NCBI database; ORF Finder was used to look up the complete open reading frame of the gene; The Expasy database and BioEdit software were used to predict physicochemical properties and amino acid composition of He-mnp1 protein,and analyze the hydrophilicity/hydrophobicity and transmembrane region;The SignalP 4. 1 software was used to predict protein signal peptide; The clustal W with MEGA 5. 1 software was adopted to complete the He-mnp1 protein sequence homology alignment and to construct the phylogenetic trees of white rot fungi MnPs,respectively. The CDD database was used to predict protein conserved domains,and check the He-mnp1 heme,substrate and manganese,calcium binding site etc. The PredictProtein software and SWISS-MODEL software were used to complete the He-mnp1 protein secondary structure prediction and to construct homologous 3D modeling,respectively.[Result]The full-length cDNA of He-mnp1 was 1 279 bp,the ORF of 1 080 bp with starting codon of ATG and stopping codon of TAA,including 5'UTR of 68 bps and 3'UTR of 131 bps and encoded 359 amino acids. Bioinformatics analysis showed that the He-mnp1 protein has the highest content of Ala,without Tyr,and the Mw 38. 18 is kDa,with the pI of 4. 35 . The He-nmp1 protein has an obvious hydrophilic region and two hydrophobic regions in the area of 81 -105 and 121 -141,and belongs to hydrophilic protein. He-mnp1 protein precursor polypeptides consists of a