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SysFinder:A customized platform for search,comparison and assisted design of appropriate animal models based on systematic similarity
  • ISSN号:1673-8527
  • 期刊名称:《遗传学报:英文版》
  • 时间:0
  • 分类:Q78[生物学—分子生物学] S823.2[农业科学—畜牧学;农业科学—畜牧兽医]
  • 作者机构:[1]Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China, [2]Shanghai Center for Blain formation Technology, Shanghai 200235, China, [3]Key Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China, [4]Center for Advanced Models for Translational Sciences and Therapeutics, University of Michigan Medical Center, Ann Arbor, M148109, USA, [5]Biomedical Information Research Center, Children's Hospital of Shanghai, Shanghai 200040, China, [6]Collaborative Innovation Center for Genetics and Development, Fudan University, Shanghai 200433, China
  • 相关基金:supported by the National High Technology Research and Development Program of China(No.2015AA020104);the National Key Research and Development Program on Precision Medicine(No.2016YFC0901700);the National Basic Research Program of China(Nos.2011CB910204,2011CB510102,and 2010CB529200);the National Key Technology Support Program (No.2013BA1101B09);the National Key Scientific Instrument and Equipment Development Project(No.2012YQ03026108);the National Grand Program on Key Infectious Diseases(No. 2015ZX10004801);the Medical-Engineering Cross Project of Shanghai Jiao Tong University(No.YG2016MS33);the Youth Innovation Promotion Association CAS;the National Institutes of Health grants(Nos.R01HL117491 and R01HL129778 to Y.E.C)
中文摘要:

动物模型逐渐地正在获得价值由对为病人使用的临床的代理人的反应或抵抗跨比较。然而,从动物模型产生的许多疾病机制和药效果不对人可转让。处理这些问题,我们开发了 SysFinder (http://lifecenter.sgst.cn/SysFinder ) ,为科学家的一个平台为翻译研究当模特儿发现适当动物。SysFinder 为人的基因的系统的比较提供一条以话题为中心的途径,其功能涉及一个特定的科学话题,到动物模型的相应相应基因。科学话题能是某个疾病,药,基因功能或生物小径。SysFinder 计算多水平类似索引在指定科学话题评估人和动物模型的类似。同时, SysFinder 提供种类特定的信息在在人和动物模型之间的分子的机制调查差别。而且, SysFinder 为短指南 RNA (sgRNAs ) 的决心提供一个用户友好的平台,相同武装设计一个新动物模型。案例研究在帮助试验性的科学家说明 SysFinder 的能力。SysFinder 是一个有用平台让试验性的科学家在人的分子的机制执行他们的研究。

英文摘要:

Animal models are increasingly gaining values by cross-comparisons of response or resistance to clinical agents used for patients.However,many disease mechanisms and drug effects generated from animal models are not transferable to human.To address these issues,we developed SysFinder(http://lifecenter.sgst.cn/SysFinder),a platform for scientists to find appropriate animal models for translational research.SysFinder offers a "topic-centered" approach for systematic comparisons of human genes,whose functions are involved in a specific scientific topic,to the corresponding homologous genes of animal models.Scientific topic can be a certain disease,drug,gene function or biological pathway.SysFinder calculates multi-level similarity indexes to evaluate the similarities between human and animal models in specified scientific topics.Meanwhile,SysFinder offers species-specific information to investigate the differences in molecular mechanisms between humans and animal models.Furthermore,SysFinder provides a userfriendly platform for determination of short guide RNAs(sgRNAs) and homology arms to design a new animal model.Case studies illustrate the ability of SysFinder in helping experimental scientists.SysFinder is a useful platform for experimental scientists to carry out their research in the human molecular mechanisms.

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期刊信息
  • 《遗传学报:英文版》
  • 北大核心期刊(2004版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院遗传与发育生物学研究所 中国遗传学会
  • 主编:薛勇彪
  • 地址:北京市安定门外大屯路中科院遗传发育所
  • 邮编:100101
  • 邮箱:ycxb@genetics.ac.cn
  • 电话:010-64807669
  • 国际标准刊号:ISSN:1673-8527
  • 国内统一刊号:ISSN:11-5450/R
  • 邮发代号:2-819
  • 获奖情况:
  • 1996年获中科院优秀期刊二等奖,1997年获全国优秀期刊三等奖,200年获中科院优秀期刊二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国生物医学检索系统,美国科学引文索引(扩展库),美国生物科学数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2000版)
  • 被引量:17519