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采用ChIP—DSL启动子芯片筛选Kid下游调控基因
  • ISSN号:1000-8179
  • 期刊名称:《中国肿瘤临床》
  • 时间:0
  • 分类:R384.1[医药卫生—医学寄生虫学;医药卫生—基础医学] R730.21[医药卫生—肿瘤;医药卫生—临床医学]
  • 作者机构:[1]乳腺癌防治教育部重点实验室天津市肿瘤防治重点实验室天津医科大学附属肿瘤医院生物化学及分子生物学室,天津市300060, [2]天津大学药物科学与技术学院
  • 相关基金:本文课题受国家自然科学基金资助(编号:30471671)
中文摘要:

目的:前期研究发现驱动蛋白样DNA结合蛋白(kinesin—like DNA binding protein,Kid)的编码基因(kinesin—like 4,KNSL4)在乳腺原发癌中的表达下调与患者差的预后相关。本研究的目的是筛选Kid下游调控基因,为探讨Kid在乳腺癌发生和发展中的作用机制提供依据。方法:采用染色质免疫沉淀技术和含人类20045个功能基因启动子序列的Oligo芯片,筛选Kid抗体染色质免疫沉淀的DNA与芯片杂交的荧光强度,与无抗体对照比较差异达2倍以上的基因作为Kid调控的候选基因;采用ChIP—PCR方法验证候选基因的启动子与Kid的结合;采用实时定量RT—PCR方法验证Kid蛋白量改变对候选基因mRNA表达水平的影响。结果:筛选出287个Kid调控的候选靶基因;候选基因ATF71P和CDC25C的Kid特异性染色质免疫沉淀扩增产物量与非特异对照比较差异分别为2.2倍和2.4倍;ATF7IP和CDC25C在KNSIA siRNA干扰的乳腺癌细胞中的表达水平较对照细胞分别下调1.6倍和5.8倍。结论:Kid对ATF7IP和CDC25C的转录呈负向调节作用;Kid可能通过对靶基因表达的转录调控进而影响乳腺癌的生物学行为。

英文摘要:

Objective: Previous studies have shown that a downregulation of kinesin-like 4 (KNSLA) mRNA level is correlated with poor prognosis in breast cancer patients. The purpose of this study was to identify the target genes of kinesin-like DNA binding protein (Kid) anti to investigate the role of Kid in the carcinogenesis and development of breast cancer. Methods: DNA sequences occupied by Kid in MDA-MB-435S cells were profiled based on the chromatin immunoprecipitation- DNA selection and ligation (ChlP-DSL) method combined with promoter mieroarray experiments. The genes that were 2- fold or more differentially enriched by anti-Kid antibody compared to non-antibody were considered to be candidate genes. The candidate genes were validated by ChIP-PCR assay. The expression of candidate genes in MDA-MB-435S cells and MDA-MB-435S/KNSIA-siRNA cells was detected by real-time reverse transcription-PCR (RT-PCR) assay. Results: A total of 287 candidate genes were considered after ChlP-DSL and promoter microalTay. ChlP-PCR assay showed that ATF7IP and CDC25C genes were 2.2 and 2.4-fold enriched, respectively, by anti-Kid antibody. The expression of ATF7IP and CDC25C mRNA in MDA-MB-435S/KNSL4-siRNA cells was 1.6 and 5.8-fold upregulated compared with the parental cells. Conclusion: Kid negatively regulates transcription of the ATF7IP and CDC25C genes, and it may be involved in the carcinogenesis and development of breast cancer through this mechanism.

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期刊信息
  • 《中国肿瘤临床》
  • 中国科技核心期刊
  • 主管单位:中国科学技术协会
  • 主办单位:中国抗癌协会
  • 主编:郝希山
  • 地址:天津市河西区体院北环湖西路天津肿瘤医院C楼3层
  • 邮编:300060
  • 邮箱:cjco@cjco.cn
  • 电话:022-23527053
  • 国际标准刊号:ISSN:1000-8179
  • 国内统一刊号:ISSN:12-1099/R
  • 邮发代号:6-18
  • 获奖情况:
  • 1997、1999、2001三次获中国科协优秀期刊奖励基金,2001年获天津市科技期刊一等奖,1996年获中国科协优秀期刊三等奖,2011年天津市优秀期刊提名奖,2011年中国精品科技期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:37940