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视神经慢性损伤相关差异表达cDNA文库的鉴定与分析
  • ISSN号:0258-879X
  • 期刊名称:《第二军医大学学报》
  • 时间:0
  • 分类:R774.6[医药卫生—眼科;医药卫生—临床医学]
  • 作者机构:[1]第二军医大学长征医院神经外科,上海市神经外科研究所,上海200003
  • 相关基金:国家自然科学基金(30271333).
中文摘要:

目的:对构建的猫视神经慢性损伤相关差异表达cDNA文库进行初步克隆、鉴定和分析。方法:用氯化钙转化法转化大肠杆菌进行cDNA文库扩增和蓝白斑筛选,每个文库随机挑取300个白色克隆用菌落PCR进行鉴定。对阳性克隆菌落进行DNA测序以获得差异表达基因片段序列。将测序所得的序列通过互联网用Blast程序查找日本国家DNA数据库进行同源性分析。用实时定量PCR验证差异克隆。结果:PCR鉴定获得1000个阳性菌落,测序获得674个EST片段,序列长度在200~800bp之间。同源性分析结果提示4周正向文库得到14个同源基因,4周反向文库得到20个同源基因,8周正向文库得到23个同源基因,8周反向文库得到19个同源基因。这些基因可归类于能量代谢、物质转运、信号转导、基因转录、细胞损伤与修复、MHC分子等。实时定量PCR检测的4个克隆证实是差异表达序列。结论:本研究构建的视神经慢性损伤相关差异表达cDNA文库为进一步鉴定和研究慢性视神经损伤相关基因提供了实验基础。

英文摘要:

Objective:To clone,identify and analyze subtractive cDNA libraries of differentially expressed genes associated with chronic optic nerve compression in cats. Methods: The constructed cDNA libraries were amplified by E. coli transformation with calcium chloride and were subjected to blue and white screening. Three hundred positive bacterial clones were randomly chosen from each library and were identified by colony PCR. The positive clones were sequenced to screen for the differentially expressed genes. The identified sequences were then analyzed for homology using Blast program against the DNA database bank of Japanese through internet. Real-time PCR was performed to verify the expression of the 4 differential clones. Results: One thousand positive clones were identified by PCR and 674 ESTs were obtained by seqeuncing, with length ranging from 200 to 800bp. Results from Blast analysis revealed 14,20,23 and 19 homolog genes in 4-w forward,4-w reverse, 8-w forward and 8-w reverse subtractive libraries, respectively. These genes fell into several functional groups, such as energy and metabolism, ion transport, gene transcription, signal transduction, cellular injury and repair, and MHC molecules. Result of real-time PCR verified that the 4 clones were differentially expressed. Conclusion: The constructed subtractive cDNA libraries lay an experimental basis for further identification and study of the differentially expressed genes related to chronic optic nerve injury.

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期刊信息
  • 《第二军医大学学报》
  • 北大核心期刊(2011版)
  • 主管单位:第二军医大学
  • 主办单位:第二军医大学
  • 主编:吴孟超
  • 地址:上海市翔殷路800号
  • 邮编:200433
  • 邮箱:bxue@smmu.edu.cn
  • 电话:021-81870791
  • 国际标准刊号:ISSN:0258-879X
  • 国内统一刊号:ISSN:31-1001/R
  • 邮发代号:4-373
  • 获奖情况:
  • 2008年被评为首批"中国精品科技期刊"2008年获第二...,2004年获第四届全军医学期刊质量评比优秀奖,2002年获第二届国家期刊奖百种重点期刊奖,2000年获首届《CAJ-CD规范》执行评优活动执行优秀奖,1999年获上海高校优秀自然科学学报评比一等奖,1999年获全国高校自然科学学报及教育部优秀科技期...,1997年获上海科技期刊评比二等奖
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:30859