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飞蝗表皮蛋白Obstructor家族基因的分子特性及基于RNAi的功能分析
  • ISSN号:0578-1752
  • 期刊名称:《中国农业科学》
  • 时间:0
  • 分类:S816.7[农业科学—饲料科学;农业科学—畜牧学;农业科学—畜牧兽医]
  • 作者机构:[1]山西大学应用生物学研究所,太原030006, [2]农业有害生物综合治理山西省重点实验室,太原030006, [3]山西省农业科学院植物保护研究所,太原030031
  • 相关基金:国家“973”计划(2012CB114102)、国家自然科学基金(31272380)、教育部博士点专项基金(博导类)(20121401110008)
中文摘要:

【目的】获得飞蝗(Locusta migratoria)表皮蛋白 Obstructor(Obst)家族基因的 cDNA 序列,并研究其序列特征和 mRNA 表达特性,探讨其生物学功能,为害虫防治提供新的分子靶标。【方法】采用生物信息学方法搜索飞蝗转录组数据库获得 Obst 家族基因 cDNA 片段,并进行 BLAST 分析得到 Obst 家族基因的 cDNA 序列;采用 RACE 技术扩增该家族基因的3′cDNA 序列,拼接后获得全长;SignalP 在线软件分析蛋白的信号肽,SMART 网站预测其功能域,并使用 Mega 5.10软件中 Neighbor-Joining 方法,与黑腹果蝇(Drosophila melanogaster) Obst 家族基因和赤拟谷盗(Tribolium castaneum)CPAP3家族基因(Obst 家族基因的同源基因)氨基酸序列进行聚类分析;采用 real-time quantitative PCR(qPCR)方法检测 LmObst 家族基因在5龄若虫不同组织部位和不同龄期体壁的表达情况,绘制表达图谱;采用 RNA 干扰(RNAi)技术探讨 LmObsts 对飞蝗发育的影响。【结果】在飞蝗转录组数据库中搜索得到8个Obst 家族基因的cDNA片段,通过NCBI进行BLAST分析显示与赤拟谷盗CPAP3、黑腹果蝇 Obst 高度同源,属于 LmObst 家族基因片段,其中5个是全长序列,3个序列缺失3′端;采用 RACE 技术获得3′末端 cDNA 序列;将得到的8个 LmObst 家族基因全长序列进行功能域分析,发现具有 Obst 家族表皮蛋白的特点,即有1个信号肽与3个几丁质结合域 ChtBD2;并与黑腹果蝇、赤拟谷盗同源基因进行进化树的构建,根据进化树分析结果,分别命名为 LmObst-A1、LmObst-A2、LmObst-B、LmObst-C、LmObst-D1、LmObst-D2、LmObst-E1和 LmObst-E2。qPCR 结果显示 LmObst-E1和 LmObst-E2在前肠和后肠高特异性表达,LmObst-D1在体壁和前肠高表达,其他 LmObsts 在体壁或外胚层内陷形成的前肠和后肠高表达,在胃盲囊、中肠、马氏管和脂肪体中低表达;LmObst 家族基因在5龄若虫?

英文摘要:

Objective] The objective of this study is to obtain cDNA sequences of Obstructor (Obst) family genes of cuticular proteins from Locusta migratoria, clarify their molecular characterization and biological function, and to get new molecular target for pest management. [Method] The cDNA fragments of Obst family genes were searched from locust transcriptome database and the sequences were further analyzed by BLAST at NCBI, the candidated cDNA fragments belonging to the Obst family genes were confirmed by sequence alignment with other known insect Obst family genes. The primers were designed for non full-length cDNA sequences and RACE-PCR was performed to amplify 3′ cDNA sequences, the full-length cDNA sequences of Obst family genes were assembled by overlap region. All the full-length cDNA sequences were translated into amino acid sequences and signal peptides were analyzed by SignalP tool, functional domains were predicted by SMART website. Then phylogenetic tree was constructed by using Mega 5.10 software with homologous amino acid sequences encoded by the Obsts from Drosophila melanogaster and the CPAP3 family genes (the Obst homologous genes) from Tribolium castaneum. The real-time quantitative PCR (qPCR) was applied to analyze the gene expression patterns of LmObst genes in different tissues and developmental stages of the 5th instar nymphs in the integument. RNA interference (RNAi) technology was used to explore biological function of these Obst genes. [Result] Eight cDNA fragments assumed to be Obst family genes were got from locust transcriptome database, which showed high similarity with CPAP3 family genes of T. castaneum and Obst family genes of D. melanogaster by BLAST analysis. Five of them were the full-length cDNA sequences, and three of them missed 3′ end sequences. Then three full-length cDNA sequences were further amplified by using RACE-PCR technique. The functional domain analysis of eight LmObsts showed that they all had a signal peptide and three chitin binding domain ChtBD2,

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期刊信息
  • 《中国农业科学》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国农业部
  • 主办单位:中国农业科学院 中国农学会
  • 主编:万建民
  • 地址:北京中关村南大街12号中国农业科学院图书馆楼4101-4103室
  • 邮编:100081
  • 邮箱:zgnykx@caas.cn
  • 电话:010-82109808 82106279
  • 国际标准刊号:ISSN:0578-1752
  • 国内统一刊号:ISSN:11-1328/S
  • 邮发代号:2-138
  • 获奖情况:
  • 中国期刊方阵“双高”期刊,第三届中国出版政府奖提名奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:85620