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基于株平均值的胚乳性状QTL作图的极大似然方法
  • ISSN号:0496-3490
  • 期刊名称:《作物学报》
  • 时间:0
  • 分类:Q348[生物学—遗传学] S330[农业科学—作物遗传育种;农业科学—农艺学]
  • 作者机构:[1]扬州大学江苏省作物遗传生理重点实验室,江苏扬州225009
  • 相关基金:国家自然科学基金项目(39900080、30270724和30370758)联合资助.
中文摘要:

根据三倍体胚乳性状的数量遗传模型,发展出一种新的专用于胚乳性状数量基因座位(QTL)区间作图的统计方法。该方法以分离群体中各植株的分子标记基因型以及植株上若干粒种子胚乳性状的平均值为数据模式,采用基于平均值混合分布理论的极大似然方法进行QTL分析。QTL效应估计通过EM算法实现。由于该方法利用标记基因型内QTL基因型的混合分布特性,因此,它比同样基于株平均值的最小平方QTL分析方法以及迭代重新加权最小平方QTL分析方法具有更高的统计功效和精确度。方法的可行性和有效性通过计算机模拟数据分析得到了进一步验证。

英文摘要:

Endosperm traits are important in determining grain quality in cereals. Endosperm, which is derived from two polar nuclei fusing with one sperm, is a triploid tissue whose genetic constitution is more complex than common diploid tissue. Current statistical methods for mapping quantitative trait loci (QTL) under diploid genetic control have not been effective for dealing with endosperm traits because of the complexity of their triploid inheritance. Based on the quantitative genetic models for triploid endosperm traits and mixture distribution theory, a new maximum likelihood method implemented via expectation-maximization algorithm which included the exact and approximate EM algorithms for mapping of quantitative trait loci (QTL) underlying endosperm traits was proposed in this paper. The method used the DNA molecular marker genotypes of each plant in segregation population such as F2, backcross etc., and the plant average of several endosperms of each plant as data set to map QTL. Because the method considered the mixture distribution property of QTL genotypes within flanking marker genotypes, it was expected that the proposed method not only increased the statistical power of QTL mapping but also improved the accuracy and precision of QTL effect estimates. Efficiency and feasibility of the methods have been verified through Monte Carlo simulation studies. The means and standard deviations of the estimated QTL effects and locations as well as the empirical powers under different QTL heritabilities and sampling strategies were listed in Table 1. Results of simulation showed that: ( 1 ) Whether the exact EM algorithm or the approximate EM algorithm, the method may provide accurate estimates of beth the QTL effects and locations with very high statistical power; (2) Though the exact EM algorithm can' t significantly increase the statistical power of QTL detecting and the accuracy of QTL locations compared with the approximate EM algorithm, it may apparently increase the precision of QTL locations

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期刊信息
  • 《作物学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国作物学会 中国农业科学院作物科学研究所
  • 主编:万建民
  • 地址:北京海淀区中关村南大街12号中国农业科学院
  • 邮编:100081
  • 邮箱:zwxb301@caas.cn
  • 电话:010-82108548
  • 国际标准刊号:ISSN:0496-3490
  • 国内统一刊号:ISSN:11-1809/S
  • 邮发代号:82-336
  • 获奖情况:
  • 2002年-第三届中国科协优秀科技期刊二等奖,2002-2009年-百种中国杰出学术期刊,2004年获“全国优秀期刊一等奖”,2005年获第三届国家期刊奖提名奖,2009年评为“2008年度中国精品科技期刊”,2009年被评为“新中国60年有影响力的期刊”,2011年获"第二届中国出版政府奖期刊奖提名奖"
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:49369