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Genome-wide Identification of microRNAs that Respond to Drought Stress in Seedlings of Tertiary Relict Ammopiptanthus mongolicus
  • ISSN号:1000-6850
  • 期刊名称:《中国农学通报》
  • 时间:0
  • 分类:Q943.2[生物学—植物学]
  • 作者机构:Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, College of Biological Sciences and Biotechnology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Analysis and Testing Center, Tsinghua University
  • 相关基金:financially supported by the National Natural Science Foundation of China (Grant No. 31270737);111 Project (Grant No. B13007);Program for Changjiang Scholars and Innovative Research Team in University (Grant No. IRT13047);Natural Science Foundation of Beijing (No. 6112016, No.KZ20150020021)
中文摘要:

microRNAs(miR NAs) are important post-transcriptional regulators of gene expression in plant abiotic stress responses. Ammopiptanthus mongolicus is a typical evergreen woody xerophyte, which makes it an ideal model system for studying drought tolerance in woody plants. The response of mi RNAs to drought stress is still unknown in this plant. In this research, we obtained 34 695 665 raw reads from two small RNA libraries constructed from control and drought-treated A. mongolicus seedlings by the Illumina deep sequencing technology. Length analysis revealed that reads of 20, 21, and 24 nucleotides accounted for the majority of the small RNAs in the two libraries. Sequence analyses identified 65 conserved mi RNA sequences from 190 members of 31 mi RNA families and 20 potential novel mi RNAs from 17 families that were differentially expressed between the two libraries. The expression patterns of 25 of these mi RNAs were significantly different in the two libraries, but only am-mi R4 a-c was downregulated during drought stress, the other 24 were upregulated. The expression trends determined by the Hi Seq sequencing and by q RT-PCR were similar. Furthermore, 35 target genes for the conserved mi RNA were markedly changed and 52 target genes for the potential novel mi RNAs were predicted and their functions were annotated by computational analysis. Our results provide new molecular evidence for understanding the molecular mechanisms of drought response and tolerance in A. mongolicus.

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期刊信息
  • 《中国农学通报》
  • 北大核心期刊(2008版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国农学会
  • 主编:石元春
  • 地址:北京市朝阳区麦子店街22号中国农学期刊处
  • 邮编:100025
  • 邮箱:edit@agri.org.cn
  • 电话:010-59194480
  • 国际标准刊号:ISSN:1000-6850
  • 国内统一刊号:ISSN:11-1984/S
  • 邮发代号:2-772
  • 获奖情况:
  • 全国农业核心期刊,中国科协优秀学术期刊,全国农业学会优秀期刊
  • 国内外数据库收录:
  • 中国中国科技核心期刊,中国北大核心期刊(2008版)
  • 被引量:94571