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印度-西太平洋胡椒鲷亚科鱼类DNA条形码及分子系统进化研究
  • ISSN号:1000-3207
  • 期刊名称:《水生生物学报》
  • 时间:0
  • 分类:Q346.3[生物学—遗传学]
  • 作者机构:[1]仲恺农业工程学院,生命科学学院,广州510225
  • 相关基金:国家自然科学基金项目(30972258); 广东省大学生创新创业训练计划项目(201511347028); 仲恺农业工程学院大学生创新基金项目(2014A23)资助
中文摘要:

为探讨COⅠ基因作为条形码在胡椒鲷亚科鱼类物种鉴定的可行性,研究测定了胡椒鲷亚科8种鱼类51个个体线粒体COⅠ基因长度为651 bp的序列,利用MEGA 5.0计算胡椒鲷亚科种内与种间的遗传距离,基于最大似然法与贝叶斯法构建了系统进化树。结果显示:胡椒鲷亚科鱼类种间平均遗传距离(0.142)显著大于种内平均遗传距离(0.003),物种间遗传距离均大于Hebert推荐的物种鉴定最小种间遗传距离0.020(2%)。系统进化树上,同一物种不同个体间均能形成独立的单系分支,表明COⅠ基因可作为胡椒鲷亚科物种鉴定的有效条形码基因。研究同时揭示,在形态分类上被认为是同种异名的两种胡椒鲷(条纹胡椒鲷与东方胡椒鲷)的COⅠ基因序列差异达到0.070,有可能是两个独立的物种。此外,在属级水平,少棘胡椒鲷属与胡椒鲷属种类之间的平均遗传距离小于胡椒鲷属内部种间的遗传距离,支持少棘胡椒鲷归属于胡椒鲷属的观点。

英文摘要:

To explore whether COⅠ sequences could be used as the DNA barcodes in the identification of Plectorhynchinae species, we analyzed the 651 bp COⅠ sequences from 51 individuals of 18 Plectorhynchinae fish in this study. The genetic distances between and within species were calculated using MEGA 5.0, and the molecular phylogenetic trees were constructed using the maximum likelihood and Bayesian inference methods. The results showed that the average inter-species genetic distance(0.142) was 47 times higher than the average intra-species genetic distance(0.003). All the interspecies genetic distances were larger than the minimum value 0.020(2%) suggested by Hebert for the species identification. In the molecular phylogenetic trees, each individual of the same species could form an independent monophyletic group, indicating that COⅠ could be potentially used as an effective barcode gene in the rapid and accurate identification of Plectorhynchinae species. According to the genetic distance values, we found that two Plectorhinchus species, P. orientalis and P. vittatus which were conventionally regarded as synonyms, could be actually two distinct species because of their large COⅠ genetic variations(0.070). The average genetic distance between Diagramma and Plectorhinchus was lower than the values of intra-Plectorhinchus species, which implied that the genetic variation between Diagramma and Plectorhinchus might be below the significant level. This supported the notion that Diagramma could be classified into the Plectorhinchus genus.

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期刊信息
  • 《水生生物学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中科院水生所
  • 主编:桂建芳
  • 地址:武昌东湖南路7号中科院水生所
  • 邮编:430072
  • 邮箱:Acta@ihb.ac.cn
  • 电话:027-68780701
  • 国际标准刊号:ISSN:1000-3207
  • 国内统一刊号:ISSN:42-1230/Q
  • 邮发代号:82-329
  • 获奖情况:
  • 湖北省十佳重点期刊,中国农学会中国水产学会优秀科技期刊一等奖,中国科学院优秀期刊三等奖,中国期刊方阵“双效”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国生物科学数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:21674