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Comprehensive profiling of EBV gene expression in nasopharyn- geal carcinoma through paired-end transcriptome sequencing
  • ISSN号:1001-9448
  • 期刊名称:《广东医学》
  • 时间:0
  • 分类:Q786[生物学—分子生物学] S855.3[农业科学—临床兽医学;农业科学—兽医学;农业科学—畜牧兽医]
  • 作者机构:[1]State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine and, [2]Department of Experimental Research, Sun Yat-sen University Cancer Center, Guangzhou 510060, China, [3]First Affiliated Hospital of Jinan University, Guangzhou 510630, China, [4]Department of Nasopharyngeal Carcinoma, Sun Yat-sen University Cancer Center, Guangzhou 510060, China, [5]Division of Infectious Disease, Brigham and Women 's Hospital and Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA, [6]Beijing Genomics Institute Co., Ltd., Shenzhen 518083, China, [7]Department of Medical Oncology, Affiliated Tumor Hospital of Guangzhou Medical University, Guangzhou 510095, China, [8]Department of Oncology and Hematology, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510120, China
  • 相关基金:This study was supported by 973 Program and 863 Program from the Ministry of Science and Technology of China (Nos. 2011CB504300 and 2015AA020931), National Natural Science Foundation of China (Nos. 91440106, 91019015, and 81302037), Ph.D. Startup of Guangzhou Medical University (No. 2012C65), Guangzhou Science and Technology Planing Project (No. 2014J4100181), and Young Teacher Training Program ofStm Yat-sen University (No. 13ykpy50).
中文摘要:

在鼻咽的癌(NPC ) 的 Epstein-Barr 病毒(EBV ) 基因的潜伏的表示模式广泛地被调查了,并且在 NPC 的几 lysin 的基因的表示被报导了。然而,通过在 NPC 的 EBV transcriptome 分析的全面信息是有限的。我们执行了对结束 RNA-seq 到系统地并且包括地在 NPC 织物和 C666-1 NPC 房间线描绘 EBV 基因的表示,它一致地带 EBV。除了限制打 II 潜伏感染,类型 III 潜伏 EBNA3s 基因和lysin 的基因的一个实质的数字的抄本,例如 BZLF1 , BRLF1 ,和 BMRF1 ,通过 RNA-seq 被检测并且进一步通过也执行的实时 PCR.We 在 C666-1 房间和 NPC 织物被验证聚类分析以 EBV 基因表示分类 NPC 耐心的组,它介绍了 NPC 样品的二种子类型。结果在 NPC 病人揭示了 EBV 基因表示的有趣的模式。这个聚类与 heterotrimeric G 蛋白质发信号有关与许多发信号的小径被相关,例如那些,发炎由 chemokine 并且 cytokine 发信号调停了,核糖体,蛋白质新陈代谢,流行性感冒感染,和 ECM 受体相互作用。我们的联合调查结果建议在 NPC 的 EBV 基因的表示被限制不仅打 II 潜伏基因而且打 III 潜伏和 lysin 的基因。这研究在 NPC 的发展提供了进一步的卓见进 EBV 的潜在的角色。

英文摘要:

The latent expression pattern of Epstein-Barr Virus (EBV)igenes in nasopharyngeal carcinoma (NPC) has been extensively investigated, and the expression of several lytic genes in NPC has been reported. However, comprehensive information through EBV transcriptome analysis in NPC is limited. We performed paired-end RNA-seq to systematically and comprehensively characterize the expression of EBV genes in NPC tissue and C666-1 NPC cell line, which consistently carries EBV. In addition to the transcripts restricted to type II latency infection, the type Ⅲ latency EBNA3s genes and a substantial number of lytic genes, such as BZLF1, BRLF1, and BMRF1, were detected through RNA-seq and were further verified in C666-1 cells and NPC tissue through real- time PCR. We also performed clustering analysis to classify NPC patient groups in terms of EBV gene expression, which presented two subtypes of NPC samples. Results revealed interesting patterns of EBV gene expression in NPC patients. This clustering was correlated with many signaling pathways, such as those related to heterotrimeric G-protein signaling, inflammation mediated by chemokine and cytokine signaling, ribosomes, protein metabolism, influenza infection, and ECM-receptor interaction. Our combined findings suggested that the expression of EBV genes in NPC is restricted not only to type II latency genes but also to type Ⅲ latency and lyric genes. This study provided further insights into the potential role of EBV in the development of NPC.

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期刊信息
  • 《广东医学》
  • 北大核心期刊(2011版)
  • 主管单位:广东省卫生和计划生育委员会
  • 主办单位:广东省医学学术交流中心
  • 主编:苏焕群
  • 地址:广州市惠福西路进步里2号之6
  • 邮编:510180
  • 邮箱:gdyx1963@163.com zhuangxw@126.com
  • 电话:020-81906074 81865066
  • 国际标准刊号:ISSN:1001-9448
  • 国内统一刊号:ISSN:44-1192/R
  • 邮发代号:46-66
  • 获奖情况:
  • 中国科技论文统计源期刊,美国《化学文摘》(CA)收录期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:70380