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核桃NBS类抗病基因类似物的序列特征及其与炭疽病的抗性
  • ISSN号:0578-1752
  • 期刊名称:中国农业科学
  • 时间:2014
  • 页码:344-356
  • 分类:S562[农业科学—作物学]
  • 作者机构:[1]山东农业大学林学院,山东泰安271018, [2]作物生物学国家重点实验室,山东泰安271018
  • 相关基金:国家“十二五”科技支撑计划(2013BAD14801)、国家自然科学基金(31170632)、山东省农业良种工程项目(2012LZ010)
  • 相关项目:基于连锁遗传和关联分析的核桃抗炭疽病候选基因确定
中文摘要:

【目的】利用同源序列法分离核桃的NBS(NucleotidebindingSite)类抗病基因类似物,为核桃抗炭疽病分子辅助育种及抗病基因的克隆提供基础。【方法】以35个核桃优系为试材,利用接种法鉴定供试材料对炭疽病的抗性;根据己知植物抗病基因的保守结构域P-loop和GLPL设计简并引物,以核桃优系的基因组DNA为模板,通过PCR扩增NBS类抗病基因同源序列片段,并分析所得NBS类抗病基因类似物与核桃优系炭疽病抗性的关系;利用BLASTN/X程序对所得NBS序列在GenBank数据库中进行同源性搜索;利用MEGA5.2及DNAman7.0等软件对其进行序列相似性分析和系统进化研究。【结果】35个供试核桃优系中,有20个优系为抗炭疽病类型(R),其相对抗性指数在0.63—0.82;有5个优系为中抗类型(M),相对抗性指数在0.27—0.56;有10个为感病类型(s),相对抗性指数在0.00—0.21。PCR结果显示,从20个抗炭疽病优系的基因组扩增得到20条NBS类抗病基因类似序列;而在其它15个优系(5个中抗优系和10个感病优系)中未扩增到条带,表明核桃NBS序列与炭疽病抗性相关联。BLASTN显示,所得NBS序列在核苷酸水平与GenBank中已知的核桃NBS序列(jrRGAPGs)存在89%-ioo%~源性,与其它物种NBS序列的同源性在69%以上;BLASTX显示,所得NBS序列与已知核桃NBS抗病蛋白同源性为77%-99%,与其它物种的NBS抗病蛋白同源性在49%-66%。氨基酸序列多重比对分析表明,所得核桃NBS序列均包含有抗病基因所具有的典型功能域,如P-Ioop、kinase-2、kinase-3和GLPL等,在典型功能域的核苷酸多态性(Pi)明显低于非保守区,有较高保守性。系统发育分析表明,在核苷酸水平上可将所得核桃优系的NBS序列区分为7类,在氨基酸水平上可分TIR和non—TIR两大类7个亚类;所得核桃NBS序列非同义替换率(dN)和同

英文摘要:

[ Objective ] Isolating NBS-type (Nucleotide binding site) resistance gene analogs (RGAs) from walnut (Juglans regia L.) using homology-based method would provide a foundation for molecular-assisted selection and for cloning R gene during walnut breeding. [Method] Thirty-five walnut superiors were used as plant materials in the study and their resistance to anthracnose was identified with inoculation. NBS-type RGAs were isolated by a PCR strategy using degenerate primers specific to P-loop and GLPL, conserved motifs of NBS domain in plant R gene. The relationship between NBSs and walnut anthracnose resistance was analyzed. Sequence identification of obtained sequences was performed against known RGAs deposited in GenBank using BLASTN/X algorithms. Similar and phylogenetic analysis were elaborated using MEGA 5.2 and DNAman 7.0 software. [Result] Out of 35 tested walnut superiors, 20 superiors were identified as resistant (R) with a relative resistance index (RRI) ranging from 0.63 to 0.82; 5 of them were medium resistant (M), whose RRI ranged 0.27-0.56; the rest 10 superiors as susceptible (S) with the RRI ranging 0.00-0.21. NBSs were amplified only in 20 resistant superiors and no bands were found in the remaining 15 superiors (5 medium resistant and 10 susceptible), indicating that the NBS-RGAs were associated with the resistance to walnut anthracnose (Colletotrichum gloeosporioides). BLASTN showed the obtained NBSs shared high similarities to cloned jrRGAPGs with a identity ranging 89%-100%; and they shared than 69% homology to other species from GenBank; BLASTX revealed 77%-99% and 49%-66% similarity to the NBS proteins from jrRGAPGs and other species, respectively. Multiple alignment analysis revealed that these NBS-type RGAs contained some well-characteristics motifs of NBS genes, including P-loop, kinase-2, kinase-3 and GLPL. The nucleotide polymorphism and diversity (Pi) were highly conserved at each motif than non-conservative fragments, indicating their conservativ

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期刊信息
  • 《中国农业科学》
  • 中国科技核心期刊
  • 主管单位:中华人民共和国农业部
  • 主办单位:中国农业科学院 中国农学会
  • 主编:万建民
  • 地址:北京中关村南大街12号中国农业科学院图书馆楼4101-4103室
  • 邮编:100081
  • 邮箱:zgnykx@caas.cn
  • 电话:010-82109808 82106279
  • 国际标准刊号:ISSN:0578-1752
  • 国内统一刊号:ISSN:11-1328/S
  • 邮发代号:2-138
  • 获奖情况:
  • 中国期刊方阵“双高”期刊,第三届中国出版政府奖提名奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:85620