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抑制HIF-1α表达的siRNA序列长效shRNA抑制载体的构建
  • ISSN号:1671-6825
  • 期刊名称:《郑州大学学报:医学版》
  • 时间:0
  • 分类:R735.1[医药卫生—肿瘤;医药卫生—临床医学]
  • 作者机构:[1]郑州大学医药科学研究院肿瘤室,郑州450052, [2]郑州大学生物工程系肿瘤生物学多肽生物化学教研室,郑州450001
  • 相关基金:国家自然科学基金资助项目30873002 30972707
中文摘要:

目的:设计特异抑制缺氧诱导因子-1α(HIF-1α)蛋白诱导表达的小干扰RNA(siRNA)序列,并构建能长效抑制HIF-1α基因表达的HIF-1α的短发夹siRNA(shRNA)表达载体。方法:依据NCBI数据库获得HIF-1αmR-NA序列,利用Whitehouse、SiDirect和Rationalsi RNA Design软件及Blast设计和优化siRNA序列;将siRNA序列转换成编码shRNA的DNA序列后克隆入pENTRTM/H1/TO载体,测序鉴定;将重组质粒pENTRTM/H1/TOHIF-1α转染食管上皮细胞Het-1A(实验组),并设阴性对照(转染阴性对照序列)、空白对照组和诱导对照组。实验、阴性对照和诱导对照组细胞经CoCl2化学诱导。Western blot法检测4组HIF-1α蛋白的表达。结果:以优化改造的含29核苷酸的干扰序列构建shRNA表达载体,经测序鉴定无误。4组细胞HIF-1α蛋白表达比较,差异有统计学意义(F=66.863,P〈0.001)。实验组Het-1A细胞HIF-1α蛋白表达较诱导对照和阴性对照组明显下降。结论:成功构建了HIF-1αshRNA表达载体。

英文摘要:

Aim:To predict the small interfering RNA(siRNA) sequence using the bio-informatics technology and construct short hairpin RNA(shRNA) expression vector for long-term inhibition of hypoxiable inducible factor-1α(HIF-1α).Methods:According to the HIF-1α sequence obtained from NCBI database,Whitehouse,siDirect and Rational siRNA Design software were used to predict the siRNA interference sequence and followed by homological analysis with Blast.DNA oligos encoding shRNA were synthesized and cloned into pENTRTM/H1/TO vector followed by identification.pENTRTM/H1/TOHIF-1α recombinant plasmid was transfected into esophageal epithelial cell line Het-1A.HIF-1α protein expression was examined by western blot.Results:An optimum sequence with 29 nucleotides were obtained.shRNA expression vector was constructed with the 29 nucleotides fragment and identified by sequencing.The expression of HIF-1α protein among four groups were different,there were obvious differences(F=66.863,P0.001).The chemical induction made HIF-1α protein expression decreased significantly.Conclusion:HIF-1α shRNA interfere expression vector has been successfully constructed.The bio-informatics technology could be conveniently applied to for HIF-1α siRNA design which can promote the further study.

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期刊信息
  • 《郑州大学学报:医学版》
  • 中国科技核心期刊
  • 主管单位:河南省教育厅
  • 主办单位:郑州大学
  • 主编:辛世俊
  • 地址:郑州市高新区科学大道100号
  • 邮编:450001
  • 邮箱:xzshi@126.com
  • 电话:0371-67781728
  • 国际标准刊号:ISSN:1671-6825
  • 国内统一刊号:ISSN:41-1340/R
  • 邮发代号:36-111
  • 获奖情况:
  • 综合性医药卫生类核心期刊,教育部优秀科技期刊一等奖,中国优秀科技期刊二等奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),波兰哥白尼索引,美国剑桥科学文摘,中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:15607