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2种猪圆环病毒2型TaqMan实时荧光定量PCR检测方法的建立及比较(英文)
  • ISSN号:1672-0857
  • 期刊名称:《中国畜牧兽医文摘》
  • 时间:0
  • 分类:S[农业科学]
  • 作者机构:[1]江苏省农业科学院兽医研究所,农业部兽用生物制品工程技术重点实验室,国家兽用生物制品工程技术研究中心,江苏南京210014, [2]南京农业大学动物医学院,江苏南京210095
  • 相关基金:国家自然科学基金(31302071):公益性行业(农业)科研专项(201303046);江苏省自主创新项目(CX(14)2045);江苏省第四期”333高层次人才培养工程”(第二层次)资助项目(BRA2012194)
中文摘要:

[目的]实现在体外对猪圆环病毒2型(Porcine circovirus type 2,PCV2)的定量检测。[方法]设计合成2组特异性引物和Taq Man探针,构建分别包含PCV2 ORF1和ORF2基因全长的重组质粒作为标准品,经过反应体系和反应条件的优化,绘制标准曲线,建立2种检测PCV2的分别基于PCV2 ORF1和ORF2的Taq Man荧光定量PCR方法。[结果]所建立的2条标准曲线的Ct值与模板拷贝数的对数之间具有良好的线性关系,相关系数R均在0.99以上,扩增效率均在90%~110%;重复性好,组内变异系数均小于5%;特异性强,以猪细小病毒(PPV)、猪圆环病毒1型(PCV1)、猪伪狂犬病毒(PRV)、猪繁殖与呼吸综合征病毒(PRRSV)为模板时均无扩增;敏感性高,ORF1方法可达1.0×101copies/μl,ORF2方法可达1.0×102copies/μl。用建立的2种荧光定量PCR方法分别对80份临床样品进行检测并对结果进行比较,结果表明,其中72份临床样品的定量结果数量级基本一致,有8份临床样品的定量结果数量级不一致。利用SYBR GreenⅠ荧光定量PCR方法对8份样品进行了检测,证明这8份样品中确实存在P1的感染。[结论]基于ORF1建立的定量检测方法更为准确,可用于PCV2的快速诊断和定量检测。

英文摘要:

[Objective] In this study, the quantitive detection of PCV2 (porcine circovirus type 2) in vitro was achieved. We aimed to establish two kinds of TaqMan real-time PCR methods based on PCV20RF1 and ORF2 respectively and compare them. [Method] According to the relatively'conserved sequences of PCV20RF1 and ORF2 registered in GenBank, two pairs of specific primers and TaqMan probes were designed and synthesized. Then the recombinant plasmids containing the whole sequences of PCV20RF1 and ORF2 were constructed to draw the standard curves through optimizing the reaction system and conditions. And thus two kinds of TaqMan real-time PCR detection methods based on the whole sequences of ORF1 and ORF2 respectively were constructed for PCV2. [Result] For the two established standard curves, the Ct values showed a good linear relationship with the loga- rithms of copy numbers of templates (F2〉0.99). The amplification efficiency ranged from 90% to 110%. The amplifications all had a good repeatability with variation coefficients within groups all less than 5%. Moreover, the amplifications all had a good specificity. When the sequences of porcine parvovirus (PPV), porcine circovirus type 1 (PCV1), swine pseudorabies virus (PRV), porcine reproductive and respiratory syndrome virus (PRRSV) were used as templates, the target sequence was not amplified. The amplifications also had a high sensitivity. The ORF1 detection method could reach 1.0x10T copies/;ul, and the ORF2 detection method could reach 1.0×10^2 copies/μl. The two established real-time PCR detection methods were used to detect the 80 clinical samples respectively. The results showed the magnitudes of 72 amplified samples were basically consistent between the 2 detection methods, while the magnitudes of the other 8 amplified samples were inconsistent. Then the 8 samples were detected with SYBR Green I real-time PCR method established based on the sequence of PCV2-1ike factor P1 by Wen et aL The PCV2-1ike factor P1 was amplified in all the 8

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期刊信息
  • 《中国畜牧兽医文摘》
  • 主管单位:国家农业部
  • 主办单位:中国农业科学院农业信息研究所
  • 主编:刘继芳
  • 地址:北京市海淀区中关村南大街12号
  • 邮编:100081
  • 邮箱:zgxm@vip.163.com
  • 电话:010-82109390
  • 国际标准刊号:ISSN:1672-0857
  • 国内统一刊号:ISSN:11-4919/S
  • 邮发代号:80-282
  • 获奖情况:
  • 国内外数据库收录:
  • 被引量:5124