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Alterations of Alternative Splicing Patterns of Ser/Arg-Rich (SR) Genes in Response to Hormones and Stresses Treatments in Different Ecotypes of Rice (Oryza sativa)
  • ISSN号:1000-3282
  • 期刊名称:《生物化学与生物物理进展》
  • 时间:0
  • 分类:Q78[生物学—分子生物学] S435.121.4[农业科学—农业昆虫与害虫防治;农业科学—植物保护]
  • 作者机构:[1]Key Laboratory for Bio-Resource and Eco-Environment, Ministry of Education/State Key Laboratory of Hydraulics and Mountain River Engineering/College of Life Science, Siehuan University, Chengdu 610064, P.R. China, [2]Neijiang Hybrid Rice Research and Development Center, Neijiang 641000, P.R. China, [3]Department of Plant, Soil and Entomological Sciences, University of ldaho, Moscow 83844, USA, [4]School of Biotechnology and Food Engineering, Hefei University of Technology, Hefei 230009, P.R.China
  • 相关基金:This work was supported by the National Basic Research Program of China (2011CB 100401), the National Science Fund of China for Distinguished Young Scientists (30825030), the National Natural Science Foundation of China (30970260, 30770466 and 30971752), and the Key Project from Chongqing Local Government, China (2010AA1019).
中文摘要:

Ser/Arg-rich (SR) genes encode proteins that play pivotal roles in both constitutive and alternative splicing of pre-mRNA. However, not much effort has been made to investigate the alternative splicing of their own pre-mRNA. In this study, we conducted comprehensive analyses of pre-mRNA splicing for 22 SR genes in three rice (Oryza sativa L.) ecotypes indica, japonica and javanica. Using different ecotypes we characterized the variations in expression and splicing patterns of rice SR genes in different tissues and at different developmental stages. In addition, we compared the divergence in expression and splicing patterns of SR genes from seedlings of different rice ecotypes in response to hormones application and environmental stresses. Our results revealed the complexity of alternative splicing of SR genes in rice. The splicing varies in different tissues, in different ecotypes, in response to stresses and hormones. Thus, our study suggested that SR genes were subjected to sophisticated alternative splicing although their encoding proteins were involved in the splicing process.

英文摘要:

Ser/Arg-rich (SR) genes encode proteins that play pivotal roles in both constitutive and alternative splicing of pre-mRNA. However, not much effort has been made to investigate the alternative splicing of their own pre-mRNA. In this study, we conducted comprehensive analyses of pre-mRNA splicing for 22 SR genes in three rice (Oryza sativa L.) ecotypes indica, japonica andjavanica. Using different ecotypes we characterized the variations in expression and splicing patterns of rice SR genes in different tissues and at different developmental stages. In addition, we compared the divergence in expression and splicing patterns of SR genes from seedlings of different rice ecotypes in response to hormones application and environmental stresses. Our results revealed the complexity of alternative splicing of SR genes in rice. The splicing varies in different tissues, in different ecotypes, in response to stresses and hormones. Thus, our study suggested that SR genes were subjected to sophisticated alternative splicing although their encoding proteins were involved in the splicing process.

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期刊信息
  • 《生物化学与生物物理进展》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国科学院生物物理研究所 中国生物物理学会
  • 主编:王大成
  • 地址:北京市朝阳区大屯路15号
  • 邮编:100101
  • 邮箱:prog@sun5.ibp.ac.cn
  • 电话:010-64888459
  • 国际标准刊号:ISSN:1000-3282
  • 国内统一刊号:ISSN:11-2161/Q
  • 邮发代号:2-816
  • 获奖情况:
  • 1999年中国期刊奖提名奖,2000年中国科学院优秀期刊特别奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),荷兰文摘与引文数据库,美国剑桥科学文摘,美国科学引文索引(扩展库),美国生物科学数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:18821