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鲫和鳜主要过敏原小清蛋白的基因克隆及序列分析
  • ISSN号:1000-0615
  • 期刊名称:水产学报
  • 时间:2012.11.11
  • 页码:1650-1657
  • 分类:Q785[生物学—分子生物学] S917[农业科学—水产科学]
  • 作者机构:[1]集美大学生物工程学院,福建厦门361021, [2]集美大学福建省高校水产科学技术与食品安全重点实验室,福建厦门361021, [3]上海海洋大学食品学院,上海201306
  • 相关基金:国家自然科学基金项目(31071519);福建省自然科学基金项目(2010J01044,2010J06012);集美大学科研基金(ZQ2011011)
  • 相关项目:基质金属蛋白酶对鱼类肌肉胶原蛋白的作用机理研究
中文摘要:

小清蛋白(parvalbumin,vv)是鱼类的主要过敏原,为分析淡水鱼PV的序列及结构特征,采用RT-PCR方法,从鲫和鳜肌肉中分别克隆得到2种小清蛋白的基因序列。生物信息学分析结果显示,4种基因的序列长度均为330bp,编码109个氨基酸残基,推导分子量在11.6ku左右,等电点为4.45-4.69。氨基酸序列分析表明,克隆得到的这4种PV序列均含有丙氨酸-14、亮氨酸.16、半胱氨酸.19、苯丙氨酸.67、谷氨酰胺-69以及苏氨酸.79等β型PV特征性残基序列,表明克隆的目的基因均为β型PV。鲫的2种PV序列相似性为80.73%,鳜的2种PV的序列相似性为83.49%。对克隆得到的PV序列进行空间结构分析显示,这4种PV序列均含有3个螺旋一松弛一螺旋结构,即EF一手型结构,其中靠近c端功能域的两个手型结构为Ca^2+结合位点。

英文摘要:

Parvalbumin (PV) is the major allergen of fish species. So far, research concerning fish allergy has been focused mainly on marine fish. China is the largest consumer and producer of freshwater fish in the world, and many people suffered from allergy when consuming freshwater fish. Therefore, figuring out the molecular characters of PV from freshwater fish would be important. In this study, four gene sequences of PV isoforms were amplified and cloned from crucian carp and mandarin fish by RT-PCR, with two genes from each species. All the four genes were 330 bp in length, encoding 109 amino acid residues. The deduced molecular weight of them was approximately 11.6 ku, and isoelectric points were 4.45-4.69. The existence of amino acid residues of Ala-14, Leu-16, Cys-19, Phe-67, Gln-69 and Thr-79 suggested that all the sequences belonged to 13-PV. The identity between the two sequences of crucian carp was 80.73 %, and was 83.49 % in mandarin fish. The identity between PVs from different fish species was higher than 75 % and the sequences of Ca2+ binding sites were highly conserved. Phylogenetic tree based on some PV amino acid residues revealed that PVs are clustered into two major clades, teleost fish and other vertebrates. PVs of teleost were clustered into orthologous groups, suggesting duplication of the PV genes before the speci- ation of teleost while after the speciation of fish. The tertiary structures of these four PVs were constructed using SWISS-MODEL. They all contain three helix-loop-helix motifs named EF-hand. Two domains next to the C terminal were Ca2+ binding sites. These results may provide a molecular basis for further study on the allergen of fish PVs.

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期刊信息
  • 《水产学报》
  • 中国科技核心期刊
  • 主管单位:中国科协
  • 主办单位:中国水产学会
  • 主编:黄硕琳
  • 地址:上海市军工路334号上海水产大学
  • 邮编:201306
  • 邮箱:jfc@shou.edu.cn
  • 电话:021-61900228
  • 国际标准刊号:ISSN:1000-0615
  • 国内统一刊号:ISSN:31-1283/S
  • 邮发代号:4-297
  • 获奖情况:
  • 曾先后三次获中国科协专项基金资助,获首届《CAJ-CD规范》执行优秀奖,获水产类期刊一等奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国剑桥科学文摘,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:26128