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应用广义活性指标预测酶催化反应的分子间活性
  • ISSN号:0023-074X
  • 期刊名称:Chinese Science Bulletin
  • 时间:2012.10.10
  • 页码:2787-2793
  • 分类:TQ323.8[化学工程—合成树脂塑料工业]
  • 作者机构:[1]辽宁师范大学化学化工学院,大连116029
  • 相关基金:国家自然科学基金重点项目(21133005)和国家自然科学基金(21073080,20873055)资助
  • 相关项目:分子体系单电子作用势的理论探索与应用
中文摘要:

为了进一步验证广义活性指标的合理性与准确性,本文将其应用到了大分子生物体系中,结合局域硬软酸碱(HSAB)原理,研究酶催化反应的活性序列,即砷酸盐还原酶ArsC(1LJU10~17)和低分子量的磷酸盐还原酶LWMPTPase(1PNT12~18)分别亲核进攻砷酸盐和磷酸盐的所有形式(H3YO4/H2YO4-/HYO42-/YO43-,Y=As/P)的反应活性序列,其中,广义局域软度由有限差分近似下的从头计算B3LYP/6-311+G(d,p)方法和直接的ABEEMσπ方法获得.随着底物的负电荷不断增大,体系的整体软度和中心原子的局域软度均变得更软,砷酸盐及其还原酶也比磷酸盐及其还原酶要软.利用广义局域软度结合软度的匹配规则,可知随着底物负电荷的逐渐增加,原子个数较大的酶与底物之间的反应活性不断升高,并且-2价的阴离子(HAsO42-和HPO42-)能够在溶液中稳定存在.所预测的活性序列与实验所测得的结果是相一致的,可见,广义局域软度在预测分子间活性方面能够给出合理的预测.然而,原局域软度结合软度的匹配原则在预测接近真实体系的分子间活性的时候,却得到与实验相反的结果.

英文摘要:

In order to further check the rationality and accuracy of the generalized reactivity descriptor, our main aim is applying it on the greater biological system. Hence, the reactivity sequences of the enzymatic catalysis of the nucleophile arsenate reductase (ArsC: 1LJU10-17) and low molecular weight phosphatase (LWMPTPase: 1PNT12-1 8) toward the neutral and all ionic forms of arsenate and phosphate (H3YO4/H2YO4/HYO42-/YO43-, Y=As/P) were investigated according to the generalized local softness combined with the local HSAB principle, where the generalized local softness was obtained by B3LYP/6-31 l+G(d,p) method under the finite difference approximation and the ABEEMtr~r model. It can be seen that when the charge of the substrate increases, both the global softness of the system and the local softness of the central atom of the compound increase. And then, arsenate and the ArsC are also softer than phosphate and the LWMPTPase, respectively. When the model molecule is close to the actual system, through the negative charge rising, the reaction reactivities gradually ascend by the generalized local softness combined with the softness matching procedure, and then the di-anions (HAsO~- and HPO]-) are the stabilized species in the solvent. Therefore, these results are in agreement with the experimental results, and the generalized local softness can give a successful prediction on the molecular reactivity. However, the results from the normal local softness combined with the matching criterion for predicting the intermolecular reactivity of these biological systems are not in line with the experimental results.

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期刊信息
  • 《科学通报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国科学院
  • 主编:周光召
  • 地址:北京东黄城根北街16号
  • 邮编:100717
  • 邮箱:csb@scichina.org
  • 电话:010-64036120 64012686
  • 国际标准刊号:ISSN:0023-074X
  • 国内统一刊号:ISSN:11-1784/N
  • 邮发代号:80-213
  • 获奖情况:
  • 首届国家期刊奖,中国期刊方阵“双高”期刊,第三届中国出版政府奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),美国数学评论(网络版),美国工程索引,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:81792