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Accurate localization and excision of genomic islands in four strains of Pseudomonas aeruginosa and Pseudomonas fluorescens
  • ISSN号:1000-3282
  • 期刊名称:《生物化学与生物物理进展》
  • 时间:0
  • 分类:Q939.112[生物学—微生物学] Q78[生物学—分子生物学]
  • 作者机构:[1]Key Laboratory of Microbial Metabolism, Ministry of Education, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China, [2]College of Life and Environment Sciences, Shanghai Normal University, Shanghai 200234, China
  • 相关基金:We thank Dr. Dieter Haas for providing the strain P. aeruginosa PAO1, and Dr. Ou Hongyu for discussion about this strategy. This work was supported by the National Natural Science Foundation of China (30821005 and 30870075), the National Basic Research Program of China (2009CB118906), and the Shanghai Leading Academic Discipline Project (B203).
中文摘要:

活动 genomic 岛(GIs ) 能从染色体被切除,然后形成圆形的中介并且被官方补给的内部 integrase 复兴进染色体。一些活动 GIs 能被转变,变化形式,或 transduction 也变成一个新受体房间。integrase 的行动地点通常直接是 flanked GIs 的重复(医生) 。flanking 序列的精确本地化是为决定 GI 的活动性的一个前提。活动 GIs 通常与转移 RNA (tRNAs ) 被联系。基于在 flanking 序列和 tRNA 序列之间的关联,在 Pseudomonas aeruginosa PAO1 的 11 通常认为的活动 GIs 的 flanking 序列, P。aeruginosa PA14, P。fluorescens Pf-5 和 P。fluorescens Pf0-1 被识别。在 11 GIs 之中, Pf0-1GI-1 为安息香酸盐降级负责。PAO1GI-1, Pf5GI-2, Pf5GI-3,和 Pf5GI-4 试验性地被证实从一个染色体被切除形成圆形的中介。integrases 的行动地点是这些 GIs 直接重复。由于不同医生,为 PAO1GI-1, Pf5GI-2, Pf5GI-3 和 Pf5GI-4 的内部 integrase 切地点在 T 环外面被决定 tRNAGly 基因在 tRNASer 基因和 tRNALys 基因的反密码子环外面,并且在 tRNALeu 基因的不对称的 3 结束,分别地。PAO1GI-1 和另外的活动 GIs 可以被变成因为清楚的 flanking 序列,属于不同的数的许多不同紧张。这研究关于 integrases 的行动地点描述基本信息,估计 GIs,和罐头帮助设计和转移的活动性活动 GIs 到候选人紧张。

英文摘要:

Mobile genomic islands (GIs) can be excised from the chromosome, then form a circular intermediate and be reintegrated into the chromosome by the GI internal integrase. Some mobile GIs can also be transferred into a new receptor cell by transformation, conjugation, or transduction. The action sites of the integrase are usually flanked direct repeats (DRs) of the GIs. Accurate localization of the flanking sequences is a precondition for determining the mobility of the GI. Mobile GIs are generally associated with transfer RNAs (tRNAs). Based on the correlation between flanking sequences and tRNA sequences, the flanking sequences of 11 putative mobile GIs in Pseudomonas aeruginosa PAO1, P. aeruginosa PAl4, P. fluorescens Pf-5 and P. fluorescens Pf0-1 were identified. Among the 11 GIs, Pf0-1GI-1 is responsible for benzoate degradation. PAO1GI-1, Pf5GI-2, Pf5GI-3, and Pf5GI-4 were confirmed experimentally to be excised from a chromosome to form a circular intermediate. The action sites of the integrases are these GIs direct repeats. Due to distinct DRs, cutting sites for the internal integrase of PAO1GI-1, Pf5GI-2, Pf5GI-3 and Pf5GI-4 were determined outside the T-loop of the tRNAGly gene, outside the anticodon loop of the tRNAser gene and tRNALys gene, and at the asymmetric 3'-end of the tRNALeu gene, respectively. PAO 1GI-1 and other mobile GIs may be transferred into many different strains that belong to different phyla because of the clear flanking sequences. This study describes basic information about the action sites of the integrases, assesses the mobility of GIs, and can help design and transfer mobile GIs to candidate strains.

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期刊信息
  • 《生物化学与生物物理进展》
  • 中国科技核心期刊
  • 主管单位:中国科学院
  • 主办单位:中国科学院生物物理研究所 中国生物物理学会
  • 主编:王大成
  • 地址:北京市朝阳区大屯路15号
  • 邮编:100101
  • 邮箱:prog@sun5.ibp.ac.cn
  • 电话:010-64888459
  • 国际标准刊号:ISSN:1000-3282
  • 国内统一刊号:ISSN:11-2161/Q
  • 邮发代号:2-816
  • 获奖情况:
  • 1999年中国期刊奖提名奖,2000年中国科学院优秀期刊特别奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),荷兰文摘与引文数据库,美国剑桥科学文摘,美国科学引文索引(扩展库),美国生物科学数据库,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:18821