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大白菜与结球甘蓝多态性EST-SSRs标记筛选及其EST序列分析
  • ISSN号:1674-7968
  • 期刊名称:《农业生物技术学报》
  • 时间:0
  • 分类:S512.1[农业科学—作物学]
  • 作者机构:[1]河北农业大学河北省蔬菜种质创新与利用重点实验室,保定071001, [2]河北省农林科学院经济作物研究所,石家庄050051
  • 相关基金:国家自然科学基金(No.31101552;No.31171964;No.31171976); “十二五”农村领域国家科技计划课题(No.2012AA100202-5); 高等学校博士学科点专项科研基金(No.20101302120006); 河北省自然科学基金项目(No.C2014204093;No.C2013204118); 河北省高等学校科学技术研究项目(No.Z2010149)
中文摘要:

为了实现大白菜遗传背景下结球甘蓝染色体、染色体片段的准确鉴定,探索结球甘蓝遗传物质的添加对大白菜的影响,本研究以不同类型大白菜(Brassica rapa,AA)和结球甘蓝(Brassica oleracea,CC)为材料,对来自结球甘蓝的797个表达序列标签简单序列重复(expressed sequence tag SSR,EST-SSRs)标记进行筛选,获得了269个结球甘蓝相对于大白菜具有多态性的标记。选取其中扩增产物清晰稳定和多态性差异明显的176个EST-SSRs,对其对应的EST序列进行BLAST分析,将EST序列与基因本体(Gene Ontology,GO)、京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes,KEGG)数据库比对,获得EST序列的注释信息,其中属于细胞组件C有124条,占总数的12.29%,属于分子功能F有184条,占总数的18.24%,属于生物学途径P有688条占总数的68.19%,未知功能N有13条,占总数的1.29%。EST序列参与的生物学过程方面的功能主要集中在细胞过程、代谢过程、生物调节和刺激应答、系统形态构成、信号转导与信号传递系统、免疫系统等方面。结球甘蓝相对于大白菜多态性的EST-SSRs标记的获得,为大白菜—结球甘蓝异附加系、易位系中附加的结球甘蓝染色体及染色体片段的鉴定奠定了基础。本研究建立了EST-SSRs标记靶向基因的功能注释,为进一步推断结球甘蓝遗传物质的添加对大白菜性状的影响提供参考。

英文摘要:

Aims of this research were to well identify chromosome and chromosome fragments from cabbage under background of Chinese cabbage, and to analyze the effect of cabbage (Brassica oleracea, CC) chromosome or chromosome fragments on Chinese cabbage (Brassica rapa, AA). A total of 797 expressedsequence tag SSR (EST- SSR) markers were used to screen polymorphism between Chinese cabbage and cabbage, 269 of them were polymorphic, and 12 of them were assigned on linkage group C01, 10 of them were assigned on linkage group C02, 22 of them were assigned on linkage group C03, 10 of them were assigned linkage group on C04, 13 of them were assigned on linkage group C05, 10 of them were assigned on linkage group C06, 16 of them were assigned on linkage group C07, 14 of them were assigned on linkage group C08, 13 of them were assigned on linkage group C09, and 156 of them were NOMATCH, Scaffold or Unknown. The EST sequences corresponding 176 EST-SSRs with clear polymorphism and stable amplification between Chinese cabbage and cabbage were blasted with databases of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). EST sequences annotations were obtained. Annotations about cell components had 124, accounting for 12.29% of the total, and mainly including organelle, membrane-enclosed lumen, cell junction, membrane, cell, macromolecular complex, extracellular region, cell part, membrance part, organelle part ect.. Annotations about molecular function had 184, representing 18.24% of the total, and mainly including catalytic activity, nucleic acid bingding transcription factor activity, protein binding transcription factor activity, structural molecule activity, transporter activity, binding, electron cartier activity etc.. Annotations about biological pathways had 688, representing 68.19% of the total, and mainly including cell metabolic processes, biological regulation and stimulus response systerm morphological structure, signal ransduction and signal transmission system, the immune system ec

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期刊信息
  • 《农业生物技术学报》
  • 北大核心期刊(2011版)
  • 主管单位:中华人民共和国教育部
  • 主办单位:中国农业大学
  • 主编:武维华
  • 地址:北京市海淀区圆明园西路2号中国农大生命科学楼1053
  • 邮编:100193
  • 邮箱:nsjxb@cau.edu.cn
  • 电话:010-62733684 62731615
  • 国际标准刊号:ISSN:1674-7968
  • 国内统一刊号:ISSN:11-3342/S
  • 邮发代号:2-367
  • 获奖情况:
  • 在《中国学术期刊评价研究报告》(2009-2010年)...
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国乌利希期刊指南,中国中国科技核心期刊,中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版)
  • 被引量:15081