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甘蓝、大白菜和甘蓝型油菜EXO70A1基因的克隆与表达特性
  • ISSN号:0496-3490
  • 期刊名称:作物学报
  • 时间:0
  • 页码:578-588
  • 分类:S565.4[农业科学—作物学]
  • 作者机构:[1]西南大学农学与生物科技学院,重庆400716, [2]南方山地农业教育部工程研究中心,重庆400716, [3]西南大学资源环境学院,重庆400716, [4]吉林师范大学生命科学学院,吉林四平136000, [5]西南大学重庆市蔬菜重点实验室,重庆400716
  • 相关基金:本研究由中央高校基本科研业务费专项资金(XDJK2011C012,XDJK2012818,XDJK2009C110),高等学校学科创新引智计划(B12006),国家自然科学基金项目(30971849,3090986)和重庆市自然科学基金项目(2012jjB014,2009bb1298)资助.
  • 相关项目:甘蓝SRK突变体的构建及其与SCR相互作用的单倍型特异性研究
中文摘要:

从甘蓝、大白菜与甘蓝型油菜中分离出EX070A1基因,对该基因的序列进行生物信息学分析,然后转化酵母Y187,应用半定量RT-PCR检测BoEX070A1基因的表达特性。结果表明,3种芸薹属植物EX070A1编码序列长度均为1917bp,相似性97.1%,它们的gDNA序列均为单一序列,长度分别为3797、3752和3770bp,一致度达91.0%,均由12个外显子及11个内含子组成,除了第4、第5、第6、第8个内含子外,其余内含子的保守性低于外显子;推导的3种蛋白质序列(BnEx070A1、BrEX070A1和BoEX070A1)的相似度与一致性分别达99.8%与98.1%,其二级结构、三维结构及理化特性高度相似。EX070A1基因的11个内含子的剪切位点均符合“GU-AG”法则,剪切受体(AG)的前20-50个碱基存在一段保守的序列“CU(A/G)A(C/U)”;3种芸薹属植物与拟南芥EX070A1基因的12个外显子的对应序列长度完全相同,所构成的编码区的序列一致性达90.1%,相应的蛋白质序列的相似度与一致性分别达99.8%与93.7%;分子进化分析表明,EX070A1在整个EX070蛋白家族中及不同的植物间表现出较高的保守性;BoEX070A1在酵母细胞Y187呈现弱表达;EX070A1在甘蓝的雄蕊、幼茎、幼嫩花瓣、雌蕊、幼根及叶片中均能表达,可能属于组成型表达基因,但是其表达量在不同发育时期的不同器官中存在差异,授粉前雌蕊中最高,雄蕊中最低。由此可知,EX070A1在芸薹属植物中整体高度保守,但在酵母转化株和甘蓝各器官中的组成型表达有所差异,推测EX070A1在植物细胞中具有多种重要的功能。

英文摘要:

EXO70A1 is an important signal element of self-incompatibility in Brassica. In this study, coding sequences (CDS) of EXO7OA1 and the corresponding gDNA were cloned by PCR. Sequence analysis was carried out by means of bioinformatics. RT-PCR was used to analyze expression characteristics of EXO70A1 in Brassica oleracea. And BoEXO7OA1 was transformed into yeast Y187 to explore its expression. The results showed: That the gene lengths of BnEXO7OA1, BrEXO7OA1 and Bo- EXO7OA1 were 3 797, 3 752, and 3 770 bp, respectively, and all consisted of 12 exons and 11 introns; their identity positions reached 91%. Sequence conservation was higher in exons than in introns excluding 4th, 5th, 6th, and 8th intron. CDS of three EXO7OA1 genes consisted of 1 917 base pairs and sequence similarity was 97.1%. Three proteins of EXO70A1 conduced all con- sisted of 638 amino acids; the similarity and identity of EXO70A1 in the three species were 99.8% and 98.1%, respectively.BnEXO70A1, BrEXO70A1, and BoEXO7llA1 shared similar secondary structures and three-dimensional structures. All introns started from the sequence GU and ended with the sequence AG (in the 5' to 3' direction). They are referred to as the splice donor and splice acceptor site, respectively. Another important sequence "CU(A/G)A(C/U)" in all introns of EXO7OA1 genes was lo- cated at 20-50 bases upstream of the acceptor site. The corresponding sequence lengths of all 12 exons of EXO7OA1 were identi- cal among three Brassica species and Arabidopsis thaliana; and similarity of four coding sequences was 90.1%. The similarity and identity of EXOTOA 1 proteins in the four species reached 99.8% and 93.7%, respectively. EXO70A1 was a subunit of EXOT0 family which showed high conservative in Magnoliophyta. The results showed that BoEXO7OA1 presented weak expression in Y187, while expressed in stamens, young stems, petals, pistils, young roots and leaves. However, its expression quantity was different in different tissues, with strong expression in pistils

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期刊信息
  • 《作物学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国作物学会 中国农业科学院作物科学研究所
  • 主编:万建民
  • 地址:北京海淀区中关村南大街12号中国农业科学院
  • 邮编:100081
  • 邮箱:zwxb301@caas.cn
  • 电话:010-82108548
  • 国际标准刊号:ISSN:0496-3490
  • 国内统一刊号:ISSN:11-1809/S
  • 邮发代号:82-336
  • 获奖情况:
  • 2002年-第三届中国科协优秀科技期刊二等奖,2002-2009年-百种中国杰出学术期刊,2004年获“全国优秀期刊一等奖”,2005年获第三届国家期刊奖提名奖,2009年评为“2008年度中国精品科技期刊”,2009年被评为“新中国60年有影响力的期刊”,2011年获"第二届中国出版政府奖期刊奖提名奖"
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:49369