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三种鳜鱼(Siniperca)生长激素基因的克隆及序列比较
  • ISSN号:0029-814X
  • 期刊名称:《海洋与湖沼》
  • 时间:0
  • 分类:Q75[生物学—分子生物学]
  • 作者机构:[1]长沙大学生物工程与环境科学系,长沙410003, [2]湖南农业大学动物科技学院,长沙410128, [3]上海海洋大学生命科学与技术学院,上海200090
  • 相关基金:国家自然科学基金项目资助,30640015号、30771644号;湖南省自然科学基金项目资助,06JJ20056号;湖南省教育厅重点项目资助,08A015号.
中文摘要:

采用长片段PCR及T-A克隆技术,从基因组DNA成功克隆翘嘴鳜、大眼鳜和斑鳜含完整阅读框的生长激素(Growth Hormone,GH)基因DNA全序列,翘嘴鳜序列全长5548bp,大眼鳜序列全长5483bp,斑鳜序列全长5789bp,提交GenBank数据库后获得注册号分别为EF205280、EF205281、EF441623。三种鳜鱼GH基因均由六个外显子、五个内含子组成;均在第二内含子中相同位置发现“AG”微卫星重复序列;均在第三内含子末端发现一处剪接位点序列的相邻重复。三种GH基因在第一、二、三内含子处存在碱基长度差异。序列间差异主要表现为邻近序列的重复、DNA片段的缺失或插入及单核苷酸多态性(SNP)。翘嘴鳜与大眼鳜GH基因编码氨基酸序列完全相同,两者与斑鳜序列在第150位有一个氨基酸残基差异。采用MEGA软件对三种鳜鱼GH基因DNA序列及编码氨基酸序列分别构建UPGMA系统发育树,结果表明,在系统发育中,斑鳜可能最先从共有祖先物种中分化出来。

英文摘要:

Growth hormone (GH) genes containing a complete open reading flame were cloned from genomic DNA of Siniperca chuatsi, S. kneri and S. scherzeri using long PCR and T-A cloning techniques. Their lengths were 5548bp, 5483bp, and 5789bp, and the accession numbers of the three GH genes in GenBank are EF205280, EF205281, and EF441623 respectively. All the GH genes were composed of six exons and five introns. An AG repeat microsatellite sequence was found at the same position of the 2nd introns, and a repeated splicing site was found at the end of the 3rd intron in all three genes. The lengths of the 1 st, 2nd and 3rd intron were different among all of these genes. The difference in the sequence was mainly shown in the repetition of nearby fragment, absence or insertion of DNA fragment, and single nucleotide polymorphism (SNP). The amino acid sequence coded by GH gene of S. chuatsi was the same with that of S. kneri, but it was different from that of S. scherzeri at the 150th loci. Using MEGA software, the UPGMA phylogenetic trees were constructed respectively for DNA sequences of GH genes and the amino acid sequences coded by these genes. The results indicated that S. scherzeri might most probably be first differentiated out from a common ancestor before other two in phyletic evolution.

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期刊信息
  • 《海洋与湖沼》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国海洋湖沼学会
  • 主编:孙松
  • 地址:青岛市南海路7号中科院海洋所内
  • 邮编:266071
  • 邮箱:
  • 电话:0532-82898753
  • 国际标准刊号:ISSN:0029-814X
  • 国内统一刊号:ISSN:37-1149/P
  • 邮发代号:2-421
  • 获奖情况:
  • 2000年中国科学院优秀期刊一等奖,2000年山东省科委、新闻出版黑署评估优秀级,中国期刊方阵“双百”期刊
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:21021