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柴胡药材干根DNA提取及RAPD分析
  • ISSN号:0253-2670
  • 期刊名称:《中草药》
  • 时间:0
  • 分类:R282.7[医药卫生—中药学;医药卫生—中医学]
  • 作者机构:[1]山西师范大学生命科学学院,山西临汾041004, [2]山西大学化学生物学与分子工程教育部重点实验室,山西太原030006
  • 相关基金:国家自然科学基金资助项目(30570174)
中文摘要:

目的探索一种适用于柴胡药材于根DNA提取的方法,为实现以分子标记方法辨别柴胡药材奠定基础。方法比较研究了分别用CTAB法、SDS法和高盐低pH法等3种方法提取柴胡样品基因组DNA。柴胡药材干根经过PVP以及TNE缓冲液进行不同的预处理,以CTAB法抽提DNA。以EcoRⅠ/MseⅠ双酶切琼脂糖凝胶电泳及RAPD扩增检测提取DNA的质量。采用NTSYS-pc软件计算Jaccard遗传相似系数,以非加权配对算术平均数法(UPGMA)建立聚类图。结果常规DNA提取方法提取药材干根DNA溶液经4℃放置后,黏稠并褐变,严重影响酶切和RAPD扩增。样品预处理优化条件是研磨时加入3%PVP,TNE缓冲液于0℃浸提2次,每次30min。以该优化的预处理方法处理6个柴胡药材干根样品,提取DNA条带清晰,酶切完全,RAPD扩增图谱清晰稳定,共获得有效扩增条带28条,其中多态性条带为20条,占71.43%。聚类分析表明,6个栽培品中,原产地为山西灵丘外地引种(LQWY)和甘肃陇西(LX)、山西灵丘(LQ)和山西方山(FSH)的亲缘关系较近,陕西商洛(SHL)和其他5个栽培品的亲缘关系较远。结论柴胡药材干根经过预处理后,可采用常规的DNA提取方法抽提DNA,所提DNA适合于酶切、RAPD等分子标记分析。

英文摘要:

Objective To study the genomic DNA extraction from the dried roots of Bupleurum chinense. Methods Genomic DNA was extracted from the dried roots of B. chinense by means of three methods of routine CTAB, SDS, and low pH extraction medium with high salt. Based on CTAB method, the pretreatment of samples was modified by adding PVP to grind and TNE buffer to pre-extract. The DNA samples were analyzed by restriction EcoR I/Mse I double enzyme digestion, agarose gel electrophoresis, and RAPD amplification. The Jaccard coefficient was worked out by NTSYS-pc software, and a cluster dendrogram of six samples was established based on UPGMA. Results The DNA could be extracted, but not be completely restricted and effectively amplified, the solution of the DNA became ropy and brown by stored up at 4 ℃, which was extracted from the dried roots by routine DNA extraction methods. After the samples of the dried roots were pretreated by PVP and TNE buffer, the DNA extracted by CTAB method could be completely restricted and effectively amplified. The pretreatment process was that samples of the dried roots were ground with 3 % PVP and then extracted with TNE buffer twice at 0 ℃, each 30 min. The DNA extracted with the modified method from the six dried roots samples could be digested completely by restriction endonuclease. Moreover, the fingerprints were clear and stable by RAPD with three selected primers. A total of 28 bands were amplified, among which 20 bands were polymorphic, accounting for 71.43%. The cluster analysis indicated that there was closer genetic relationship between LQWY and LX, LQ and FSH cultivars of B. chinense, respectively. The relationship of cultivar SHL was far from these of other five cultivars. Conclusion The DNA extracted by routine DNA extraction methods could be completely restricted and effectively amplified after the samples of the dried roots are pretreated by PVP and TNE buffer.

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期刊信息
  • 《中草药》
  • 北大核心期刊(2011版)
  • 主管单位:天津市科委
  • 主办单位:中国药学会 天津药物研究院
  • 主编:汤立达
  • 地址:天津市南开区鞍山西道308号
  • 邮编:300193
  • 邮箱:zcy@tiprpress.com
  • 电话:022-27474913 23006821
  • 国际标准刊号:ISSN:0253-2670
  • 国内统一刊号:ISSN:12-1108/R
  • 邮发代号:6-77
  • 获奖情况:
  • 国家期刊奖,国家“双奖”期刊,1992年获国家科委、中共中央宣传部、国家新闻出版...
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  • 美国国际药学文摘,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,波兰哥白尼索引,荷兰文摘与引文数据库,荷兰医学文摘,美国剑桥科学文摘,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国英国皇家化学学会文摘,中国北大核心期刊(2000版)
  • 被引量:90909