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鲫体重和体厚相关的EST-SSRs标记筛选及同源基因分析
  • ISSN号:1000-6907
  • 期刊名称:《淡水渔业》
  • 时间:0
  • 分类:S917.4[农业科学—水产科学] Q959.468.03[生物学—动物学]
  • 作者机构:[1]哈尔滨师范大学生命科学与技术学院,哈尔滨150025, [2]中国水产科学研究院黑龙江水产研究所,农业部淡水水产生物技术与遗传育种实验室,哈尔滨150070, [3]大连海洋大学水产与生命科学学院,辽宁大连116023
  • 相关基金:公益性行业(农业)科研专项(200903045);国家973计划项目(2010CB126305);农业部948计划项目(2011-G12)
中文摘要:

利用300个EST-SSRs标记对普通二倍体鲫(Carassius auratus)自交F2代的181个个体进行基因型检测,并对其体重、体厚两种经济性状进行单标记回归分析。Permutation检验(10 000次)结果显示,38个标记与所检测的经济性状相关,其中26个标记达到显著性相关(P〈0.05),12个标记达到极显著性相关(P〈0.01)。在38个相关标记中,有27个标记与体重相关,25个标记与体厚相关,14个标记与体重、体厚均相关。对同一标记的不同基因型之间进行多重比较,找到了与两种经济性状相关的基因型。将与性状相关的38个标记与斑马鱼(Da-nio rerio)基因组序列进行BLAST同源性比对,找到10条相似性高且功能已知的EST-SSRs序列(E〈e-20)。其中,JE594与斑马鱼膜结合环指蛋白基因march7相似性高达95%,JE3165与斑马鱼肌盲蛋白基因mbnl1的相似性达78%,JE6996与斑马鱼促蛋白激酶的基因mapk10的相似性高达98%,JE4984与斑马鱼蛋白磷酸酶的基因ppp1cab相似性达84%。本研究筛选出了与鲫体重、体厚相关的EST-SSRs标记及基因型并找到了与鲫生长相关的候选功能基因,为鲫的分子标记辅助育种(MAS)及目标性状的遗传改良提供依据。

英文摘要:

300 EST-SSRs markers were selected to analyze the genomic DNA of 181 progenies from a normal Carassius au- ratus F2 family, and two growth traits (body weight and body width) were conducted single marker regression analysis. 38 EST-SSRs markers were found to be closely related to growth traits, 26 of them were significantly associated with growth traits (P 〈 0. 05 ), the other 12 markers had a highly significant correlation with growth traits (P 〈 0. 01 ) ; In these 38 markers, 27 markers were related with body weight, 25 markers were related with body width, and 14 markers were relat- ed with both body weight and width. Meanwhile, the genotypes of these correlative loci were determined. Furthermore,by using BLAST online in NCBI, the homology identity of these 38 EST-SSRs markers was determined. Results showed that, 10 markers had significant similarity with the sequences in GenBank (E 〈 e-20 ). JE594 was highly homologous (95%) to the gene encoding membrane-associated ring finger protein of Danio rerio; JE3165 was highly homologous (78%) to the gene encoding muscleblind-like protein of D. rerio; JE6996 was highly correlated (98%) with the gene en- coding mitogen-activated protein kinase of D. rerio; JE4984 was highly correlated (84%) with the gene encoding protein phosphatase 1 of D. rerio. These loci may be used for marker-assisted selection and genetic improvement.

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期刊信息
  • 《淡水渔业》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学技术协会
  • 主办单位:中国水产学会 中国水产科学研究院长江水产研究所 中国水产科学研究院淡水渔业研究中心
  • 主编:陈大庆
  • 地址:湖北省武汉市东湖新技术开发区武大园一路8号
  • 邮编:430223
  • 邮箱:dsyy@chinajournal.net.cn
  • 电话:027-81780185
  • 国际标准刊号:ISSN:1000-6907
  • 国内统一刊号:ISSN:42-1138/S
  • 邮发代号:38-32
  • 获奖情况:
  • 中国自然科学核心期刊
  • 国内外数据库收录:
  • 中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:11619