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Cloning, expression and characterization of serine palmitoyltransferase (SPT)-like gene subunit (LCB2) from marine Emiliania huxleyi virus ( Coccol ithovirus )
  • ISSN号:0253-505X
  • 期刊名称:《海洋学报:英文版》
  • 时间:0
  • 分类:Q257[生物学—细胞生物学] S188[农业科学—农业基础科学]
  • 作者机构:[1]Bioengineering College of Jimei University, Xiamen 361021, China, [2]Key Laboratory of MOE for Coast and Wetland Ecosystem, Xiamen University, Xiamen 361005 China
  • 相关基金:The National High Technology Research and Development Program of China under contract No. 2008AA09Z408, Fujian Province Nature Science Foundation, China under contract No. 2010J01261 and the Foundation for Innovative Research Team of Jimei University, China under contract No. 2010A007.
中文摘要:

作者在海洋的 Emiliania huxleyi 病毒(EhV-99B1 ) 孤立并且描绘象基因一样的新奇丝氨酸 palmitoyltransferase (SPT ) 。EhV99B1-SPT 的开读物的框架(ORF ) 与 96 kDa 和 Ip 6.01 的一个计算的分子的团编码了 496 氨基酸的蛋白质。顺序分析的结果证明有关于在有另外的有机体的氨基酸顺序的 31%45% 身份的。最大的可能性的种系发生的树建议 EhV99B1-SPT 基因水平地可能从优核质转了。推出的氨基酸序列的恐水病的侧面与五个 transmembrane 领域(TMD ) 建议了恐水病、球状、联系膜的蛋白质主题。几个潜在的连接 N 的 glycosylation 地点在 SPT 被介绍。这些结果建议 EhV99B1-SPT 是不可分的 endoplasmic 蜂窝胃膜蛋白质。尽管有更低的顺序身份,预言的第二等、三维的结构证明袖珍结构元素 2-helices 创作了, 4 表是这酶的催化中心,与在 N 终端区域的一个典型保存 TFTKSFG 活跃地点并且离原核生物的有机体的那些很靠近。然而, EhV99B1-SPT 的 N 终端领域最非常类似于 LCB2 催化作用子单元, C 终端领域最非常类似于 LCB1 哪个的另外的有机体的规章的子单元一起形成了一个球形的分子。这个怪物高度类似于原核生物的相应 SPT。为功能的鉴定, EhV99B1-LCB2 子单元基因在 Escherichia coli 被表示,它在 E 导致了新 sphingolipid 的重要累积。coli 房间。

英文摘要:

The authors have isolated and characterized a novel serine palmitoyltransferase (SPT)-like gene in marine Emiliania huxleyi virus (EhV-99B1). The open-reading frame (ORF) of EhV99BI-SPT encoded a protein of 496 amino acids with a calculated molecular mass of 96 kDa and Ip 6.01. The results of sequence analysis showed that there was about 31% 45% identity in amino acid sequence with other organisms. The maximum likelihood phylogenetic tree suggested that the EhV99B1-SPT gene possibly horizontally transferred from the eukaryote. Hydrophobic profiles of deduced amino acid sequences suggested a hydrophobic, globular and membrane-associated protein with five transmembrane domains (TMDs) motifs. Several potential N-linked glycosylation sites were presented in SPT. These results suggested that EhV99BI-SPT was an integral endoplasmic reticulum membrane protein. Despite lower sequence identity, the secondary and three-dimensional structures predicted showed that the “pocket” structure element composed of 2a-helices and 4β- sheets was the catalytic center of this enzyme, with a typical conserved “TFTKSFG” active site in the N-terminal region and was very close to those of prokaryotic organisms. However, the N-terminal domain of EhV99B1-SPT most closely resembled the LCB2 catalysis subunit and the C-terminal domain most closely resembled the LCBI regulatory subunit of other organisms which together formed a spherical molecule. This “chimera” was highly similar to the prokaryotic homologous SPT. For a functional identification, the EhV99B1-LCB2 subunit gene was expressed in Escherichia coli, which resulted in significant accumulation of new sphingolipid in E. coli cells.

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期刊信息
  • 《海洋学报:英文版》
  • 主管单位:
  • 主办单位:中国海洋学会
  • 主编:潘德炉
  • 地址:北京海淀大慧寺路8号
  • 邮编:100081
  • 邮箱:hyxbe@263.net
  • 电话:010-62179976
  • 国际标准刊号:ISSN:0253-505X
  • 国内统一刊号:ISSN:11-2056/P
  • 邮发代号:82-285
  • 获奖情况:
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),荷兰文摘与引文数据库,美国剑桥科学文摘,美国科学引文索引(扩展库),英国科学文摘数据库,英国动物学记录
  • 被引量:331