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ID4基因表达谱的生物信息学分析
  • ISSN号:1005-1139
  • 期刊名称:军医进修学院学报
  • 时间:0
  • 页码:140-142
  • 语言:中文
  • 分类:R331[医药卫生—人体生理学;医药卫生—基础医学]
  • 作者机构:[1]解放军总医院血液科,北京100853, [2]解放军总医院南楼血液科,北京100853, [3]吉林大学第一临床医学院,吉林长春130021
  • 相关基金:国家973重点基金资助项目(2005CB522400),国家自然科学基金资助项目(30572108)
  • 相关项目:Id4基因抑制肿瘤细胞生长的机理及意义研究
中文摘要:

目的:分析ID4基因在正常组织细胞和癌变组织细胞中的表达情况,为研究该基因的表达调控机制奠定基础.方法:采用生物信息学方法,利用开放性的数据库包括Gene expression omnibus(GEO)、Affymetrix基因芯片表达数据库、人类基因组数据库(GeneBank)、基因表达数据库SAGE、GeneCard、InterPro、ProtoNet、UniProt和BLOCKS.结果:ID4基因在多种神经系统肿瘤细胞中的表达高于正常脑组织(209/3,148/3,123/3,72/3,64/3,45/3);而甲状腺滤泡癌的表达要低于正常甲状腺组织(35/172);正常乳腺组织要明显低于转移乳腺癌和原发乳腺癌的表达(10/36,10/34);正常肺组织的表达高于肺腺癌(11/4).此外,ID4基因在正常淋巴结、胚胎干细胞等细胞中也有表达.结论:生物信息学可以用来方便快捷地分析基因的表达谱;ID4基因的表达具有组织特异性.

英文摘要:

Objective:To explore the expression series of ID4 gene in normal and malignant tissues or cells as a primary work for studying the regulation mechanism of ID4 gene. Methods: Bioinformatics and free open data-set such as GeneBank, SAGE, GeneCard, GEO, InterPro, ProtoNet, UniProt and BLOCKS were used to analyze the expression series of ID4 mRNA and ID4 protein. Results: ID4 gene had higher expression in a lot of malignant neuro-tissues and cells than in normal brain tissues (209/3, 148/3, 123/3, 72/3, 54/3, 45/3 ) ; higher in normal thyroid cells than in follicular thyroid carcinoma cells ( 172/35 ), in metastasis and in situ breast carcinoma higher than normal breast (34/10, 36/10) , in normal lung tissues than lung adenocarcinoma(11/4). Further more, ID4 gene had expression in normal bone marrow, lymphocyte and embryonic stem cell normal cell. Conclusion:Bioinformatics can be used freely to analyze a gene's expression series. ID4 gene has different expression in different tissues.

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