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蜜蜂表皮蛋白apidermin(apd)基因家族3个新成员的特性鉴定及昆虫APD家族序列特征的分析
  • ISSN号:0454-6296
  • 期刊名称:Acta Entomologica Sinica
  • 时间:2012
  • 页码:12-23
  • 分类:Q966[生物学—昆虫学]
  • 作者机构:[1]泉州师范学院福建省高校分子生物学与药物化学重点实验室,福建泉州362000, [2]国家人类基因组南方研究中心,上海201203
  • 相关基金:国家自然科学基金项目(31072095); 福建省高校服务海西建设重点项目(A101); 福建省教育厅省属高校项目(JA09214)
  • 相关项目:用基因确认标签技术(GIS)筛选东方蜜蜂的抗螨基因
中文摘要:

Apidermin(APD)蛋白家族是一个新的昆虫结构性表皮蛋白家族。本研究结合生物信息学和RT-PCR扩增,对意大利蜜蜂Apis mellifera ligustica(简称"意蜂")的apd-1-like,apd-3-like和中华蜜蜂Apis cerena cerena(简称"中蜂")的apd-2等3个新的apd基因的结构特征和表达进行了分析,并分析了昆虫APD蛋白家族的序列特征。结果显示,在西方蜜蜂Apis mellifera(简称"西蜂")中,apd基因家族的6个成员串联排列在基因组序列第4号连锁群上,它们在A.m.ligustica雄蜂头部中的转录水平差异明显,且其启动子序列所含顺式元件也不同。中蜂apd-2和意蜂apd-1-like都含有3个外显子和2个内含子,而意蜂apd-3-like则由4个外显子和3个内含子组成。蛋白序列分析结果显示,目前已知的10条APD蛋白序列N末端均具有相似的信号肽序列,其成熟蛋白分子量为6.0~37.0kD,pI为6.2~10.8。其中西蜂的APD1-3、APD-like和东方蜜蜂Apiscerena的APD-2等5条较短的多肽中疏水氨基酸残基达52%~67%,且Ala含量最为丰富(占25%~34%);而丽蝇蛹集金小蜂Nasonia vitripennis的APD1-3和西蜂APD-1-like,APD-3-like等另外5条APD多肽富含Gly(21%~30%),其序列中疏水氨基酸残基含量为35%~41%。多肽序列多重比对和系统进化分析结果显示,APD家族可划分为2个亚家族。亚家族Ⅰ含有西蜂APD1-3和东方蜜蜂APD-2等4条较短的多肽序列,其N末端为一个长33aa的保守基序;亚家族Ⅱ由另外6条相对较长的多肽序列组成,其N末端保守基序长50aa,C末端保守基序长16aa。本文所描述的APD蛋白家族序列特征有助于以后从其他昆虫中鉴定新的apd基因。

英文摘要:

The apidermin(APD) protein family is a novel structural cuticular protein family of insects.To gain a better understanding of this protein family,by using bioinformatics and RT-PCR amplification,we identified three novel apd genes(apd-1-like,apd-3-like from Apis mellifera ligustica,and apd-2 from Apis cerana cerana) and investigated their structural features,and then we revealed the characteristic motifs of the APD family.The results showed that a cluster of six apd genes were tandemly arranged on chromosome 4 of Apis mellifera.These apd genes were differentially expressed in drone head of A.m.ligustica,and their expression pattern was consistent with that of the cis-acting elements in their promoter sequences.The genomic DNA of apd-2 from A.c.cerana and apd-1-like from A.m.ligustica contain three exons and two introns,while that of apd-3-like from A.m.ligustica contain four exons and three introns.As the deduced proteins of the apd genes were analyzed,it was found that the presently available 10 APDs possess similar N-terminal signal peptide sequences.The mature APD proteins ranged in size from 6.0 to 37.0 kD,and their pI ranged from 6.2 to 10.8.Intriguingly,five small APD proteins,including APD-2 from A.cerana,and APD 1-3 and APD-like from A.mellifera,were rich in hydrophobic amino acid residues(52%-67%) with Ala being the most abundant(25%-34%).However,the other five larger APDs,including APD 1-3 from Nasonia vitripennis,and APD-1-like and APD-3-like from A.mellifera,were Gly-rich(21%-30%) proteins with hydrophobic amino acid residues constituting 35%-41% of their amino acid sequences.Multiple alignment and phylogenetic analysis revealed that the APD protein family could be classified into two subfamilies.Subfamily Ⅰ,which contains four low complexity sequences(APD 1-3 from A.mellifera and APD-2 from A.cerana),was characterized by a 33-aa N-terminal conserved motif.The other six larger APD proteins were classified as subfamilyⅡ,which was featured by a 50-aa N-terminal motif and a 16

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期刊信息
  • 《昆虫学报》
  • 北大核心期刊(2011版)
  • 主管单位:中国科学院
  • 主办单位:中国昆虫学会 中国科学院动物研究所
  • 主编:黄大卫
  • 地址:北京东中关村中国科学院动物研究所
  • 邮编:100101
  • 邮箱:kcxb@ioz.ac.cn
  • 电话:010-64807173 010-64807099
  • 国际标准刊号:ISSN:0454-6296
  • 国内统一刊号:ISSN:11-1832/Q
  • 邮发代号:2-153
  • 获奖情况:
  • 国家期刊方阵“双百期刊”
  • 国内外数据库收录:
  • 俄罗斯文摘杂志,美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国剑桥科学文摘,美国生物科学数据库,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:16190