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Single Nucleotide Polymorphism (SNP) Analysis of orexin Gene 5' Regulatory Region in Chinese Indigenous Cattle Populations
  • ISSN号:1001-9111
  • 期刊名称:《中国牛业科学》
  • 时间:0
  • 分类:S828.2[农业科学—畜牧学;农业科学—畜牧兽医] Q987[生物学—遗传学;生物学—人类学]
  • 作者机构:[1]Shaanxi Key Laboratory of Molecular Biology for Agriculture,College of Animal Science and Technology,Northwest A&F University,Yangling 712100,P.R.China, [2]Guangdong Provincial Key Laboratory of Agro-Animal Genomics and Molecular Breeding,College of Animal Science,South China Agricultural University,Guangzhou 510642,P.R.China, [3]Agricultural College,Guangdong Ocean University,Zhanjiang 524000,P.R.China, [4]College of Life Sciences,Xuzhou Normal University,Xuzhou 221000,P.R.China
  • 相关基金:supported by the National Natural Science Foundation of China (30972080); the National Key Technology R&D Program of China (2008BADB2B0319); the Keystone Project of Transfergene in China (2009ZX08009-157B 2008ZX08007-002 2009ZX080 07-005B-07); the Program of National Beef Cattle Industrial Technology System China (CARS-38); China Postdoctoral Science Foundation Founded Project (20100480763); the Doctor Seed Grant of Guangdong Ocean University China (0712130)
中文摘要:

Orexin 是影响家畜的胃口和食物吸入的重要 neuropeptide 并且仔细与家畜的生长和发展被联系。在 orexin 基因的变化 5 规章的区域可能在基因表示上有影响。基于假设,五重叠了包括 orexin 基因 5 规章的区域的 1 794 bp 的碎片被在三张土生土长的牛人口定序的 PCR-SSCP 和 DNA 为单个核苷酸多型性(SNP ) 调查。观察的五个 SSCP 模式的一个总数在这个区域揭示了十 SNP。二 SSCP 模式遗传型(A 和 B ) 在 0-2 碎片被展出,(A, B 和 C ) 三在 0-5 碎片被发现。0-2 包含了四 SNP, viz, 583 T > C, 479 OT, 474 A > T,和 451 A > G。在另一 lous 0-5,六 SNP 被识别(-1 610 OG, 1 585 G > 一, 1 550 T > C, 1 548 A > C, 1 438 OT,和 1 431 OA ) 。七 SNP 在抄写因素绑定地点被发现,四在核心序列从他们存在。在 479, 474 和 451 点的 SNP 没改变他们的因素的通常认为的识别核心序列。但是在 583 点的变化把 EVI1 的有约束力的顺序变成了 NFA 并且同时为 ZFHX 创造了一个新有约束力的地点。在三张人口, A 的频率, B 和 C, 0-2 的遗传型分别地是 0.2367, 0.4842 和 0.2791。并且 0-5 的 A 模式是优势的(0.7549 ) 并且另外的 B 模式不是(0.2451 ) 。但是不同 SSCP 变体的频率越过三张牛人口变化了。在在 Nanyang 牛 6-mon 和 12-mon 的到身体重量(BW ) 和每日的重量的有的重要协会增加的 0-2 (DWG ) 的 B 遗传型变老并且可能用作一个潜在的候选人为生长和开发的基因标记。

英文摘要:

Orexin is an important neuropeptide that influences livestock's appetite and food intake and is closely related with livestock's growth and development.The variations in the orexin gene 5' regulatory region might have an influence on the gene expression.Based on the hypothesis,five overlapped fragments including 1 794 bp of orexin gene 5' regulatory region were investigated for single nucleotide polymorphisms (SNPs) by PCR-SSCP and DNA sequencing in three indigenous cattle populations.A total of five SSCP patterns observed revealed ten SNPs in the region.Two SSCP patterns genotypes (A and B) were exhibited in O-2 fragment and three (A,B and C) were found in O-5 fragment.O-2 contained four SNPs,viz.,-583 TC,-479 CT,-474 AT,and-451 AG.In another lous O-5,six SNPs were identified (-1 610 CG,-1 585 GA,-1 550 TC,-1 548 AC,-1 438 CT,and-1 431 CA).Seven SNPs were found in transcription factor binding sites and four out of them existed in the core sequences.The SNPs at-479,-474 and-451 did not change the putative recognition core sequences of their factors.But the mutation at-583 changed the binding sequence of EVI1 into NFA and created one new binding site for ZFHX simultaneously.In three populations,the frequencies of A,B and C genotypes of O-2 were 0.2367,0.4842 and 0.2791,respectively.And the A pattern of O-5 was preponderant (0.7549) and the other B pattern was not (0.2451).But the frequencies of different SSCP variants varied across three cattle populations.B genotype in O-2 had significant associations to body weight (BW) and daily weight gain (DWG) in Nanyang cattle 6-and 12-mon aged and might serve as one potential candidate genetic marker for growth and development.

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期刊信息
  • 《中国牛业科学》
  • 主管单位:中华人民共和国教育部
  • 主办单位:西北农林科技大学 中国畜牧兽医学会养牛学分会 中国良种黄牛育种委员会
  • 主编:陈宏
  • 地址:陕西杨凌西北农林科技大学西农校区动物科技学院内
  • 邮编:712100
  • 邮箱:huangn2002813@aliyun.com
  • 电话:029-87091423
  • 国际标准刊号:ISSN:1001-9111
  • 国内统一刊号:ISSN:61-1449/S
  • 邮发代号:52-113
  • 获奖情况:
  • 全国中文畜牧学核心期刊,全国畜牧兽医优秀期刊,陕西省优秀科技期刊
  • 国内外数据库收录:
  • 英国农业与生物科学研究中心文摘
  • 被引量:2954