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牛科物种 FSHβ基因外显子 1和外显子 2遗传特征分析
  • ISSN号:1004-390X
  • 期刊名称:《云南农业大学学报:自然科学版》
  • 时间:0
  • 分类:S823[农业科学—畜牧学;农业科学—畜牧兽医]
  • 作者机构:[1]云南农业大学动物科学技术学院,云南昆明650201, [2]云南省家畜改良工作站,云南昆明650225, [3]云南巴福乐水牛技术研究所,云南昆明650021, [4]江西省畜牧技术推广站,江西南昌330046
  • 相关基金:基金项目:云南省应用基础研究重点项目(2007C0003Z);国家自然科学基金项目(30660024);云南省应用基础研究计划面上项目(2006C0034M);云南省教育厅科学研究基金项目(2010Y344);国家高技术研究发展计划(“863”计划)项目(2008AA101001);云南省财政厅基金项目(槟榔江水牛种质特性研究).
中文摘要:

促卵泡素 (folliclestimulatinghormone,FSH)对刺激动物卵泡发育和促进精子生成具有重要作用,但有关牛科物种 FSH基因的群体遗传特征还不十分清楚。本文针对 FSHβ基因外显子 1和外显子 2,采用 PCRSSCP结合 PCR产物直接测序技术对 353头水牛 (来自 11个水牛群体)、30头牦牛和 30头大额牛样品进行了群体变异检测,并结合 NCBI数据库中已发表的普通牛、山羊和绵羊等物种同源序列进行了群体遗传和生物信息学分析。在 FSHβ基因外显子 1中,水牛中发现 1个核苷酸替换和 1个缺失,即 c-49A>G和 c-31delG;其中,SNP49在河流型和沼泽型水牛中均存在,等位基因 c-49A为优势等位基因,而 c-31delG只存在于沼泽型水牛中,且为杂合状态,基因频率为 0077。在牦牛外显子 1中检测到 c-37G>A和 c-12T>C替换,且为连锁遗传的,而在大额牛外显子 1中未检测到 SNP位点。在 FSHβ基因外显子 2中,水牛中发现c132G>A替换,该位点在河流型和沼泽型水牛均存在,但等位基因频率在两类水牛间不一致。在牦牛外显子 2中检测到 c9C>T和 c21C>T替换,该替换也存在于普通牛中;大额牛外显子 2为单态,未见 SNP位点。生物信息学分析显示,在一些牛科物种 FSHβ基因外显子 2中发现的 SNP位点均为同义替换,揭示了其序列的高度保守性。在牛科物种中,山羊和绵羊 FSHβ基因第 36位密码子编码氨基酸与其他物种不同,可作为区分它们的遗传标记。

英文摘要:

Follicle-stimulating hormone (FSH) plays an essential role in mammalian follicular devel-opment and spermatogenesis, but the population genetic characteristics about FSH gene in bovine spe- cies is unclear. In this study, the polymorphisms in the exon 1 and exon 2 of FSHfl gene were assayed by using the methods of PCR-SSCP with DNA sequencing in 353 water buffalo which belong to 11 dif- ferent populations, 30 yaks and 30 gayals. And population genetics and bioinformatics analysis was conducted on the data obtained in this study and retr/eved from NCBI database which included homolo- gous DNA sequences in some species such as cattle, goat and sheep. For the exon 1 of FSHfl gene, one substitution and one deletion were identified in the water buffalo, namely c. -49A 〉 G and c. - 31delG. The former was simultaneously present in river and swamp buffalo which e. -d9A was major allele, whereas the latter was only found in swamp buffalo which exist in heterozygosis and its gene fre- quency was 0. 077. Substitution c. - 37G 〉 A and c. - 12T 〉 C were identified in the exon 1 of FSHj8 gene in yak, which were linked together, but no SNP was found in the exonl of FSHfl gene in gayal. For the exon 2 of FSHfl gene, substitution c. 132G 〉 A was detected in river and swamp buffalo, but the gene frequencies at this locus are different in two kind of buffalo. Substitution c. 9C 〉 T and c. 21C 〉 T were found in the exon 2 of FSHβ gene of yak, which also existed in cattle. The exon 2 of FSHfl gene in gayal was still monomorphic. The results by bioinformatics analysis revealed the SNPs found in the exon 2 of FSHβ gene of some bovine species were all synonymous, which indicated that it was highly conservative in phylogenesis. In the species of family Bovidae, the amino acid encoded by codon 36 of FSHβ gene in goat and sheep was different with other bovine species, which can be used as the genetic marker to distinguish them from other bovine species.

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期刊信息
  • 《云南农业大学学报:社会科学版》
  • 主管单位:云南省教育厅
  • 主办单位:云南农业大学
  • 主编:盛军
  • 地址:昆明市北郊黑龙潭
  • 邮编:650201
  • 邮箱:sk@ynau.edu.cn
  • 电话:0871-5227596
  • 国际标准刊号:ISSN:1004-390X
  • 国内统一刊号:ISSN:53-1044/S
  • 邮发代号:
  • 获奖情况:
  • 国内外数据库收录:
  • 被引量:2327