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嗜热链球菌中CRISPR序列的检测与同源性分析
  • ISSN号:1002-6630
  • 期刊名称:食品科学
  • 时间:2013.2.15
  • 页码:153-157
  • 分类:TS201.3[轻工技术与工程—食品科学;轻工技术与工程—食品科学与工程] Q939.117[生物学—微生物学]
  • 作者机构:[1]东北农业大学乳品科学教育部重点实验室,黑龙江哈尔滨150030
  • 相关基金:国家自然科学基金面上项目(31171717);教育部“长江学者和创新团队发展计划”项目(IRT0959)
  • 相关项目:CRISPR序列对德氏乳杆菌抗噬菌体侵染机制的研究
中文摘要:

为探明内蒙古的8株嗜热链球菌的CRISPR,用PCR方法扩增了其CRISPR序列,并采用生物信息学方法分析和预测了重复序ylJ(directrepeat,DR)的同源性及二级结构。结果表明:除S4只含有一个CRISPR结构外,其余7株嗜热链球菌均检测出3条CRISPR序列,远高于CRISPRdatabase公布细菌中具有该结构的比例(46.4%),且分别具特异性的重复序列(DR1-DR3);CRISPR最长达2853bp,最短仅101bp。对DR的二级结构预测发现,DRl~DR3均能形成回文结构,但茎环大小会有差异;在同源性比对中发现,除多数同属或同种外,供试DR还与个别远缘菌种具有高同源性,这种现象证明了供试菌株的CRISPR序列同样存在的水平基因转移,并可能存在其他的进化进程。

英文摘要:

CRISPR was recently found to be an acquired immune system widespread in prokaryotes. In order to find out CRISPRs in 8 Streptococcus thermophilus strains isolated from Inner Mongolia, the CRISPR sequences were obtained by PCR amplification, and homology and secondary structure of direct repeat (DR) were predicted using bioinformatic methods. Results showed that all studied strains contained three CRISPR sequences except one in $4, which was much higher than the ratio (46.4%) in bacteria published on CRISPR database, and three CRISPRs had their specialized direct repeats (DR1--DR3). The longest CRISPR was 2853 bp, and the shortest was only 101 bp. According to the prediction of secondary structure, a palindrome was detected in DR1--DR3, respectively, although the sizes of stem-loops were different. For homology analysis, DR demonstrated high similarity with several individual species of distant relationships like those in the same genus or species, which suggested that the CRISPRs of tested strains also had the characteristic of horizontal gene transfer (HGT), as well as the possibility of other evolutionary process.

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期刊信息
  • 《食品科学》
  • 北大核心期刊(2011版)
  • 主管单位:中国商业联合会
  • 主办单位:北京市食品研究所
  • 主编:孙勇
  • 地址:北京西城区禄长街头条4号
  • 邮编:100050
  • 邮箱:foodsci@126.com
  • 电话:010-83155446-8006
  • 国际标准刊号:ISSN:1002-6630
  • 国内统一刊号:ISSN:11-2206/TS
  • 邮发代号:2-439
  • 获奖情况:
  • 国家“双效”期刊,1986年原商业部重大成果三等奖,1997年国内贸易部优秀科技期刊三等奖,第三届中国出版政府奖提名奖,第三届中国出版政府奖提名奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),美国工程索引,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),英国英国皇家化学学会文摘,英国食品科技文摘,中国北大核心期刊(2000版)
  • 被引量:115579