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(鱼师)鱼诺卡氏菌SYBRGreenⅠ实时荧光定量PCR检测方法的建立与应用
  • ISSN号:1000-0615
  • 期刊名称:《水产学报》
  • 时间:0
  • 分类:S941.4[农业科学—水产养殖;农业科学—水产科学]
  • 作者机构:[1]宁波大学应用海洋生物技术教育部重点实验室,浙江宁波315211
  • 相关基金:长江学者和创新团队发展计划(IRT0734); 农业部公益性行业科研专项(200903029); 浙江省自然科学基金(Y3080244)
中文摘要:

根据GenBank中蛳鱼诺卡氏菌16S-23S rRNA基因序列设计并合成一对特异性引物,经反应体系优化后建立了检测蛳鱼诺卡氏菌的SYBR GreenⅠ实时荧光定量PCR方法。结果显示,该方法线性关系良好,标准曲线的相关系数为0.998;溶解曲线分析显示产物为单一的特异峰;检测灵敏度可达10 6μg/μL的DNA含量,与嗜水气单胞菌、大肠杆菌、金黄色葡萄球菌、副溶血弧菌、麦氏弧菌不发生交叉反应,具有良好的特异性。应用建立的方法在蛳鱼诺卡氏菌病爆发时期,对16份鱼体组织、养殖水体、饲料等样品进行了检测,结果 7份为阳性,与细菌分离、培养检查结果 100%相符。既能检测发病鱼,又能检出未发病且已感染的病鱼,对病害的早期防控体现应用价值。结果表明,建立的实时荧光定量PCR方法具有特异、敏感、快速、定量等优点,可用于蛳鱼类致病鱼诺卡氏菌的快速检测。

英文摘要:

According to the 16S-23S rRNA gene sequences of Nocardia seriolae available in GenBank,a pair of primers was designed for establishing a SYBR Green I real-time fluorescence quantitative PCR method.It had a good linear relationship between initial templates and Ct values,and the correlation coefficient of the standard curve was 0.998.The sensitivity analysis showed that the developed SYBR GreenⅠreal-time PCR could detect 10?6 μg/μL DNA.The specificity assay showed that negative control and the other bacteria such as Aeromonas hydrophila、Escherichia coil、Staphylococcus aureus,could not be detected by this PCR.Through the epidemic seasons,16 fish tissue sample,4 water samples and 8 fish bait tissue samples were detected by the real-time PCR assay.Results showed that 7 out of those samples were positive,which had good agreement(100%) with bacteriological analysis by isolation and culture.It was able to diagnose the clinically diseased fishes,and to recognize the carrier of N.seriolae as well.It reflected application value on early prevention and control of disease.The results showed that the developed SYBR GreenⅠreal-time PCR assay had the advantages of specificity,sensitivity,rapidity and quantitativity,and was able to be applied to the clinical diagnosis of N.seriolae in fish.

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期刊信息
  • 《水产学报》
  • 中国科技核心期刊
  • 主管单位:中国科协
  • 主办单位:中国水产学会
  • 主编:黄硕琳
  • 地址:上海市军工路334号上海水产大学
  • 邮编:201306
  • 邮箱:jfc@shou.edu.cn
  • 电话:021-61900228
  • 国际标准刊号:ISSN:1000-0615
  • 国内统一刊号:ISSN:31-1283/S
  • 邮发代号:4-297
  • 获奖情况:
  • 曾先后三次获中国科协专项基金资助,获首届《CAJ-CD规范》执行优秀奖,获水产类期刊一等奖
  • 国内外数据库收录:
  • 美国化学文摘(网络版),英国农业与生物科学研究中心文摘,美国剑桥科学文摘,英国动物学记录,日本日本科学技术振兴机构数据库,中国中国科技核心期刊,中国北大核心期刊(2004版),中国北大核心期刊(2008版),中国北大核心期刊(2011版),中国北大核心期刊(2014版),中国北大核心期刊(2000版)
  • 被引量:26128